miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12987 3' -57.2 NC_003387.1 + 625 0.66 0.59442
Target:  5'- -aGGGCGagGGcAGCGUcgccGCcGCGGCAGc -3'
miRNA:   3'- ugCCCGCagCC-UUGUA----CGaCGUCGUC- -5'
12987 3' -57.2 NC_003387.1 + 1002 0.66 0.540254
Target:  5'- cCGGG-GUCGGAugc-GCUGCGGCc- -3'
miRNA:   3'- uGCCCgCAGCCUuguaCGACGUCGuc -5'
12987 3' -57.2 NC_003387.1 + 2722 0.71 0.307805
Target:  5'- cGCGGGCGgCGG-GCAgGCcacGCAGCAGc -3'
miRNA:   3'- -UGCCCGCaGCCuUGUaCGa--CGUCGUC- -5'
12987 3' -57.2 NC_003387.1 + 4277 0.67 0.49815
Target:  5'- cGCGGGCGaUGGAggccGCggGCgaGCAGCGc -3'
miRNA:   3'- -UGCCCGCaGCCU----UGuaCGa-CGUCGUc -5'
12987 3' -57.2 NC_003387.1 + 4576 0.73 0.220708
Target:  5'- cGCGGGCcUCGGuGGCGcGCUGCGcGCGGg -3'
miRNA:   3'- -UGCCCGcAGCC-UUGUaCGACGU-CGUC- -5'
12987 3' -57.2 NC_003387.1 + 6090 0.68 0.42834
Target:  5'- -gGGGCGUCGucggcaggcucGAacaccugcgACAUGCgcgGCAGCGGc -3'
miRNA:   3'- ugCCCGCAGC-----------CU---------UGUACGa--CGUCGUC- -5'
12987 3' -57.2 NC_003387.1 + 8769 0.67 0.529605
Target:  5'- uGCGGGCcuUCGc--CGUGCgGCGGCGGg -3'
miRNA:   3'- -UGCCCGc-AGCcuuGUACGaCGUCGUC- -5'
12987 3' -57.2 NC_003387.1 + 17494 0.74 0.185105
Target:  5'- uGCGGGCGccgcggccguagugcUCGGccAGCAUGC-GCAGCGGc -3'
miRNA:   3'- -UGCCCGC---------------AGCC--UUGUACGaCGUCGUC- -5'
12987 3' -57.2 NC_003387.1 + 18404 0.66 0.5726
Target:  5'- gACGGGuCGgccgCGGGcagcGCggGCUGCucgGGCAGc -3'
miRNA:   3'- -UGCCC-GCa---GCCU----UGuaCGACG---UCGUC- -5'
12987 3' -57.2 NC_003387.1 + 19321 0.66 0.59442
Target:  5'- aACGGccucGCG-CGuGAAUGUGcCUGCGGCGGc -3'
miRNA:   3'- -UGCC----CGCaGC-CUUGUAC-GACGUCGUC- -5'
12987 3' -57.2 NC_003387.1 + 19758 0.67 0.508547
Target:  5'- gGCGGccuCGcCGGaAACAUGCUGCAGgAc -3'
miRNA:   3'- -UGCCc--GCaGCC-UUGUACGACGUCgUc -5'
12987 3' -57.2 NC_003387.1 + 20036 0.69 0.400235
Target:  5'- gUGGGUGUCGacGACGUGC-GCGGCGa -3'
miRNA:   3'- uGCCCGCAGCc-UUGUACGaCGUCGUc -5'
12987 3' -57.2 NC_003387.1 + 20168 0.67 0.508547
Target:  5'- -aGGGCGUCGaGGGCGcgguugaugcgcUGCUGCGccucGCAc -3'
miRNA:   3'- ugCCCGCAGC-CUUGU------------ACGACGU----CGUc -5'
12987 3' -57.2 NC_003387.1 + 23723 0.7 0.364645
Target:  5'- gACGGGCG-CaGcGCAuUGCUGCAGCu- -3'
miRNA:   3'- -UGCCCGCaGcCuUGU-ACGACGUCGuc -5'
12987 3' -57.2 NC_003387.1 + 23939 0.66 0.58349
Target:  5'- cGCGGuGUGcCaGuccCAUGCUGCAGCAc -3'
miRNA:   3'- -UGCC-CGCaGcCuu-GUACGACGUCGUc -5'
12987 3' -57.2 NC_003387.1 + 26574 0.66 0.59442
Target:  5'- uGCGGGCGgugcCGG-GCAUGCUGgCucguGCuGa -3'
miRNA:   3'- -UGCCCGCa---GCCuUGUACGAC-Gu---CGuC- -5'
12987 3' -57.2 NC_003387.1 + 28207 0.68 0.447711
Target:  5'- --aGGUGgCGGAACggGCUGCGGCuGa -3'
miRNA:   3'- ugcCCGCaGCCUUGuaCGACGUCGuC- -5'
12987 3' -57.2 NC_003387.1 + 30249 0.68 0.477652
Target:  5'- cCGGGuCGUCGGggUcgGCgccgggGUcgGGCAGc -3'
miRNA:   3'- uGCCC-GCAGCCuuGuaCGa-----CG--UCGUC- -5'
12987 3' -57.2 NC_003387.1 + 31050 0.69 0.409472
Target:  5'- -aGGGCGUCGGcgaacACGUGCU-CGGCc- -3'
miRNA:   3'- ugCCCGCAGCCu----UGUACGAcGUCGuc -5'
12987 3' -57.2 NC_003387.1 + 31186 0.7 0.339424
Target:  5'- cGCGGGCGUCGccg-GUGCUgauacucagcGCAGCGGc -3'
miRNA:   3'- -UGCCCGCAGCcuugUACGA----------CGUCGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.