miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12987 5' -57.1 NC_003387.1 + 15965 0.67 0.550333
Target:  5'- uGCCGUcgCUgacggugacgcccagGCGCUcGCAGaCGGCGUCg -3'
miRNA:   3'- uCGGCGa-GA---------------UGCGGaUGUC-GCUGCAG- -5'
12987 5' -57.1 NC_003387.1 + 2839 0.67 0.547118
Target:  5'- cGGCCGCg--ACGCCgacgacaugaucguCGGUGAgGUCg -3'
miRNA:   3'- -UCGGCGagaUGCGGau------------GUCGCUgCAG- -5'
12987 5' -57.1 NC_003387.1 + 29032 0.67 0.547118
Target:  5'- cGuuGCUCgcguuguauccggcCGCCUugAGCcGCGUCa -3'
miRNA:   3'- uCggCGAGau------------GCGGAugUCGcUGCAG- -5'
12987 5' -57.1 NC_003387.1 + 24830 0.67 0.546048
Target:  5'- aGGCCGCgugugcgcugUCUGCgGCCgGguGCGugGUg -3'
miRNA:   3'- -UCGGCG----------AGAUG-CGGaUguCGCugCAg -5'
12987 5' -57.1 NC_003387.1 + 18502 0.67 0.546048
Target:  5'- uGCCGCUUga-GCCggGCAccgaccGCGACGUg -3'
miRNA:   3'- uCGGCGAGaugCGGa-UGU------CGCUGCAg -5'
12987 5' -57.1 NC_003387.1 + 12944 0.67 0.544978
Target:  5'- aGGCCGCUggccucgUUGCGCUUGCgcaccggucGGCGAgcugguCGUCg -3'
miRNA:   3'- -UCGGCGA-------GAUGCGGAUG---------UCGCU------GCAG- -5'
12987 5' -57.1 NC_003387.1 + 26699 0.67 0.535382
Target:  5'- cGCUGCUCgucgACGCCgucgUGC-GCGGCG-Cg -3'
miRNA:   3'- uCGGCGAGa---UGCGG----AUGuCGCUGCaG- -5'
12987 5' -57.1 NC_003387.1 + 46513 0.67 0.535382
Target:  5'- cAGCuCGCUCgGCGaCUgcaccaACGGCGGCGUg -3'
miRNA:   3'- -UCG-GCGAGaUGCgGA------UGUCGCUGCAg -5'
12987 5' -57.1 NC_003387.1 + 12849 0.67 0.535382
Target:  5'- cGCUGCUaugucuaUGCGCCUAgauguauuCAGCGAUaacgGUCa -3'
miRNA:   3'- uCGGCGAg------AUGCGGAU--------GUCGCUG----CAG- -5'
12987 5' -57.1 NC_003387.1 + 18292 0.67 0.535382
Target:  5'- cGGCUGCguuugCUGCGCaggaaUGcCGGCGaguGCGUCg -3'
miRNA:   3'- -UCGGCGa----GAUGCGg----AU-GUCGC---UGCAG- -5'
12987 5' -57.1 NC_003387.1 + 4917 0.67 0.535382
Target:  5'- uAGCUGCaCUGC-CCgGC-GCGGCGUCg -3'
miRNA:   3'- -UCGGCGaGAUGcGGaUGuCGCUGCAG- -5'
12987 5' -57.1 NC_003387.1 + 6417 0.67 0.534319
Target:  5'- cGGCCGCggugaCUGCggGCCagGCcgucgaggucgugGGCGGCGUCg -3'
miRNA:   3'- -UCGGCGa----GAUG--CGGa-UG-------------UCGCUGCAG- -5'
12987 5' -57.1 NC_003387.1 + 17159 0.67 0.52479
Target:  5'- cGGcCCGCgcugagCUgguGCGCCgccuggGCGGCGACGg- -3'
miRNA:   3'- -UC-GGCGa-----GA---UGCGGa-----UGUCGCUGCag -5'
12987 5' -57.1 NC_003387.1 + 30985 0.67 0.52479
Target:  5'- cGCCGa---GCGCCU-CGGCGACGa- -3'
miRNA:   3'- uCGGCgagaUGCGGAuGUCGCUGCag -5'
12987 5' -57.1 NC_003387.1 + 22013 0.67 0.52479
Target:  5'- aGGCCGUg--ACGCUagaGC-GCGGCGUCg -3'
miRNA:   3'- -UCGGCGagaUGCGGa--UGuCGCUGCAG- -5'
12987 5' -57.1 NC_003387.1 + 45078 0.67 0.52479
Target:  5'- gGGCCGUcCUGgGCCgguguuCGGCGGCcagGUCg -3'
miRNA:   3'- -UCGGCGaGAUgCGGau----GUCGCUG---CAG- -5'
12987 5' -57.1 NC_003387.1 + 48956 0.67 0.52479
Target:  5'- gGGCUGCUCgGCGUaccACuGCGuCGUCa -3'
miRNA:   3'- -UCGGCGAGaUGCGga-UGuCGCuGCAG- -5'
12987 5' -57.1 NC_003387.1 + 25795 0.67 0.514279
Target:  5'- cGGCCuGCUCgGCgGCCU-CGGUGGCGg- -3'
miRNA:   3'- -UCGG-CGAGaUG-CGGAuGUCGCUGCag -5'
12987 5' -57.1 NC_003387.1 + 13873 0.67 0.514279
Target:  5'- gAGCCGCcgauUC-AUGCCUugagcuGCGGCGGCucGUCg -3'
miRNA:   3'- -UCGGCG----AGaUGCGGA------UGUCGCUG--CAG- -5'
12987 5' -57.1 NC_003387.1 + 51228 0.67 0.514279
Target:  5'- cGGCCGCg----GCCUGguGCucGACGUCg -3'
miRNA:   3'- -UCGGCGagaugCGGAUguCG--CUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.