miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12988 5' -64.9 NC_003387.1 + 40520 0.68 0.191543
Target:  5'- gGCCCggCACCgaGCaGCGaccuGCCCGAGGg -3'
miRNA:   3'- -CGGGg-GUGGa-CGcCGCgu--CGGGCUCC- -5'
12988 5' -64.9 NC_003387.1 + 25125 0.68 0.191061
Target:  5'- gGCCCUCguACCaGCGGCacaccgcGCAGCCgauCGGGGc -3'
miRNA:   3'- -CGGGGG--UGGaCGCCG-------CGUCGG---GCUCC- -5'
12988 5' -64.9 NC_003387.1 + 1762 0.68 0.186773
Target:  5'- -gCCCgGCg-GCGGCGCuggcGCCCGAGc -3'
miRNA:   3'- cgGGGgUGgaCGCCGCGu---CGGGCUCc -5'
12988 5' -64.9 NC_003387.1 + 45722 0.69 0.182107
Target:  5'- aGCUgCUGCgcgacauuCUGCGGCGCcugcacaaguGGUCCGAGGg -3'
miRNA:   3'- -CGGgGGUG--------GACGCCGCG----------UCGGGCUCC- -5'
12988 5' -64.9 NC_003387.1 + 13640 0.69 0.182107
Target:  5'- aCCCggCCACCgucgGCGGCGgcuCGGUcgCCGAGGg -3'
miRNA:   3'- cGGG--GGUGGa---CGCCGC---GUCG--GGCUCC- -5'
12988 5' -64.9 NC_003387.1 + 34505 0.69 0.177997
Target:  5'- cGCCCgCCGC-UGCGGCGCcgcgauccucgggcuGCCCGucGa -3'
miRNA:   3'- -CGGG-GGUGgACGCCGCGu--------------CGGGCucC- -5'
12988 5' -64.9 NC_003387.1 + 3903 0.69 0.177545
Target:  5'- uGCCCgacccugaCCGCCUG-GGUGCuaacGCCCGGuGGg -3'
miRNA:   3'- -CGGG--------GGUGGACgCCGCGu---CGGGCU-CC- -5'
12988 5' -64.9 NC_003387.1 + 27142 0.69 0.177545
Target:  5'- cGUgCCCGCCgggGuCGGCGCcGCCgGGGa -3'
miRNA:   3'- -CGgGGGUGGa--C-GCCGCGuCGGgCUCc -5'
12988 5' -64.9 NC_003387.1 + 43949 0.69 0.177545
Target:  5'- cGCCCgCCGCCgcaCGGCGaaGGCCCGcauGGc -3'
miRNA:   3'- -CGGG-GGUGGac-GCCGCg-UCGGGCu--CC- -5'
12988 5' -64.9 NC_003387.1 + 34202 0.69 0.173085
Target:  5'- cGCCUgcgugCCACC-GCGGCG--GCCCGAGa -3'
miRNA:   3'- -CGGG-----GGUGGaCGCCGCguCGGGCUCc -5'
12988 5' -64.9 NC_003387.1 + 52577 0.69 0.173085
Target:  5'- gGCCCa-GCUcgGCGGCGCGGaUCgCGAGGg -3'
miRNA:   3'- -CGGGggUGGa-CGCCGCGUC-GG-GCUCC- -5'
12988 5' -64.9 NC_003387.1 + 22042 0.69 0.173085
Target:  5'- cGCCCCCGCCggUGCGaC-CGGgUCGGGGg -3'
miRNA:   3'- -CGGGGGUGG--ACGCcGcGUCgGGCUCC- -5'
12988 5' -64.9 NC_003387.1 + 7263 0.69 0.173085
Target:  5'- cGCUCCUaACCUGgcuccaCGGCGCAgGCCCGGc- -3'
miRNA:   3'- -CGGGGG-UGGAC------GCCGCGU-CGGGCUcc -5'
12988 5' -64.9 NC_003387.1 + 36802 0.69 0.164464
Target:  5'- gGCCuuCUCACCgauaaucGCGGC-CAGCUCGGGGu -3'
miRNA:   3'- -CGG--GGGUGGa------CGCCGcGUCGGGCUCC- -5'
12988 5' -64.9 NC_003387.1 + 24128 0.69 0.164464
Target:  5'- uGCCCgUACgCgGCGGUGUugAGCuuGAGGg -3'
miRNA:   3'- -CGGGgGUG-GaCGCCGCG--UCGggCUCC- -5'
12988 5' -64.9 NC_003387.1 + 44761 0.69 0.164464
Target:  5'- cGCCgCCCGCC-GUGaaGCGGCCCGAc- -3'
miRNA:   3'- -CGG-GGGUGGaCGCcgCGUCGGGCUcc -5'
12988 5' -64.9 NC_003387.1 + 24641 0.69 0.160299
Target:  5'- cGCaCCUCGcCCUGCuGCGCgaggucgccAGCgCCGAGGg -3'
miRNA:   3'- -CG-GGGGU-GGACGcCGCG---------UCG-GGCUCC- -5'
12988 5' -64.9 NC_003387.1 + 6105 0.69 0.160299
Target:  5'- gGCUCgaaCACCUgcgacaugcGCGGCaGCGGCuuGAGGg -3'
miRNA:   3'- -CGGGg--GUGGA---------CGCCG-CGUCGggCUCC- -5'
12988 5' -64.9 NC_003387.1 + 52450 0.69 0.15623
Target:  5'- uGCaCUCgACCggcGCGGCGCAGCCa-GGGc -3'
miRNA:   3'- -CG-GGGgUGGa--CGCCGCGUCGGgcUCC- -5'
12988 5' -64.9 NC_003387.1 + 19284 0.7 0.152255
Target:  5'- gGCCUgaCCGCCU-CGG-GCAGCCCGAu- -3'
miRNA:   3'- -CGGG--GGUGGAcGCCgCGUCGGGCUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.