Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12989 | 3' | -65.9 | NC_003387.1 | + | 4578 | 0.66 | 0.243388 |
Target: 5'- -cGGGCCUCGGUggcgcgcugcgcgCGGGUcuGCCacgugaucGGCGAg -3' miRNA: 3'- caCCCGGAGCCG-------------GUCCA--CGGc-------CCGCU- -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 27943 | 0.66 | 0.238086 |
Target: 5'- -gGGGgCUCGGUCGGGgcGCUcGGCGu -3' miRNA: 3'- caCCCgGAGCCGGUCCa-CGGcCCGCu -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 30096 | 0.66 | 0.237503 |
Target: 5'- cGUcGGCgggCGGCCAGG-GCCgccaagugaccuuGGGCGAg -3' miRNA: 3'- -CAcCCGga-GCCGGUCCaCGG-------------CCCGCU- -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 8065 | 0.66 | 0.221109 |
Target: 5'- -cGGcagccCCUCGGCCAGGaucGCCGaGGCc- -3' miRNA: 3'- caCCc----GGAGCCGGUCCa--CGGC-CCGcu -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 4515 | 0.66 | 0.221109 |
Target: 5'- -cGGGucaCCUCGGCCGccgccgccGGUGC-GGGCa- -3' miRNA: 3'- caCCC---GGAGCCGGU--------CCACGgCCCGcu -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 50159 | 0.67 | 0.205174 |
Target: 5'- -cGGGUCggcguacaCGGCgAGGaucUGCCGcGGCGAc -3' miRNA: 3'- caCCCGGa-------GCCGgUCC---ACGGC-CCGCU- -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 10137 | 0.67 | 0.205174 |
Target: 5'- -cGGGgCUCGGCCuucucccacAGGUGCaGGuGCGc -3' miRNA: 3'- caCCCgGAGCCGG---------UCCACGgCC-CGCu -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 2973 | 0.67 | 0.200088 |
Target: 5'- aUGGGCCUCGcUCGGG-GCCucGCGAg -3' miRNA: 3'- cACCCGGAGCcGGUCCaCGGccCGCU- -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 12199 | 0.67 | 0.200088 |
Target: 5'- -cGGGCaggUCGcuGCUcGGUGCCGGGCc- -3' miRNA: 3'- caCCCGg--AGC--CGGuCCACGGCCCGcu -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 40263 | 0.67 | 0.195112 |
Target: 5'- --aGGCCcgCGGCCAGGccGCCGccaGCGAa -3' miRNA: 3'- cacCCGGa-GCCGGUCCa-CGGCc--CGCU- -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 34396 | 0.67 | 0.195112 |
Target: 5'- -cGGGCacgaCGGCCAcGccguUGCCGGGCGc -3' miRNA: 3'- caCCCGga--GCCGGUcC----ACGGCCCGCu -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 22889 | 0.67 | 0.190244 |
Target: 5'- -gGGcGCCUCGuguagcagauuGCUAcGG-GCCGGGCGGg -3' miRNA: 3'- caCC-CGGAGC-----------CGGU-CCaCGGCCCGCU- -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 8771 | 0.67 | 0.176276 |
Target: 5'- -cGGGCCUUcGCCGugcGGcGgCGGGCGAc -3' miRNA: 3'- caCCCGGAGcCGGU---CCaCgGCCCGCU- -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 31026 | 0.67 | 0.174484 |
Target: 5'- -cGGGCCgcgcucgccgaggCGGCCAGGgcGUC-GGCGAa -3' miRNA: 3'- caCCCGGa------------GCCGGUCCa-CGGcCCGCU- -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 48063 | 0.68 | 0.167478 |
Target: 5'- -gGcGGCgUCGGCCGcuuGGcGCCGGGCc- -3' miRNA: 3'- caC-CCGgAGCCGGU---CCaCGGCCCGcu -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 12595 | 0.68 | 0.159076 |
Target: 5'- cGUGGGCCUUGaacuugcccgacGCCGGGccGCCGccuGCGAg -3' miRNA: 3'- -CACCCGGAGC------------CGGUCCa-CGGCc--CGCU- -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 45933 | 0.68 | 0.154618 |
Target: 5'- -aGGGCgaccaugucgcgCUCGGCCAGGUugaucugguucucGCCGGuGcCGAg -3' miRNA: 3'- caCCCG------------GAGCCGGUCCA-------------CGGCC-C-GCU- -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 34982 | 0.66 | 0.243983 |
Target: 5'- gGUGuGGCCccuggCGGCCcGGccggGCCgGGGCGc -3' miRNA: 3'- -CAC-CCGGa----GCCGGuCCa---CGG-CCCGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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