Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12989 | 3' | -65.9 | NC_003387.1 | + | 47229 | 1.07 | 0.000131 |
Target: 5'- gGUGGGCCUCGGCCAGGUGCCGGGCGAc -3' miRNA: 3'- -CACCCGGAGCCGGUCCACGGCCCGCU- -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 30201 | 0.73 | 0.066094 |
Target: 5'- --cGGCCUgGGCCAGG-GUCGcGGCGGg -3' miRNA: 3'- cacCCGGAgCCGGUCCaCGGC-CCGCU- -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 45086 | 0.71 | 0.091185 |
Target: 5'- cUGGGCCgguguucggCGGCCAGGUcgucgacGCCGcGGUGu -3' miRNA: 3'- cACCCGGa--------GCCGGUCCA-------CGGC-CCGCu -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 9735 | 0.71 | 0.101763 |
Target: 5'- -cGGGUCggcgucaaggUCGGCCAGGcucacgcgcaUGCCGgGGCGGc -3' miRNA: 3'- caCCCGG----------AGCCGGUCC----------ACGGC-CCGCU- -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 49054 | 0.71 | 0.104513 |
Target: 5'- --cGGCCUCGGUCAGGccgcucaGCCGGGgcaCGAg -3' miRNA: 3'- cacCCGGAGCCGGUCCa------CGGCCC---GCU- -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 28304 | 0.7 | 0.121568 |
Target: 5'- cUGGGCacccCUCGGUaucgCGGGcgugcagaucagccUGCCGGGCGAc -3' miRNA: 3'- cACCCG----GAGCCG----GUCC--------------ACGGCCCGCU- -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 29568 | 0.69 | 0.129157 |
Target: 5'- uGUGGGUgCUCgacuucgaGGCCgAGGggccggaGCCGGGCGAc -3' miRNA: 3'- -CACCCG-GAG--------CCGG-UCCa------CGGCCCGCU- -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 11353 | 0.69 | 0.139713 |
Target: 5'- uUGGGCCgucacugcagaCGGCCGGGUcGUCGuuugcGGCGAu -3' miRNA: 3'- cACCCGGa----------GCCGGUCCA-CGGC-----CCGCU- -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 49565 | 0.69 | 0.143405 |
Target: 5'- --cGGCCUC-GCCgAGGUgcgcccgcuGCCGGGCGGu -3' miRNA: 3'- cacCCGGAGcCGG-UCCA---------CGGCCCGCU- -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 6372 | 0.69 | 0.147185 |
Target: 5'- --uGGCCUCGGCCGcGGgcgacgccuUGCgUGGGCGGc -3' miRNA: 3'- cacCCGGAGCCGGU-CC---------ACG-GCCCGCU- -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 45933 | 0.68 | 0.154618 |
Target: 5'- -aGGGCgaccaugucgcgCUCGGCCAGGUugaucugguucucGCCGGuGcCGAg -3' miRNA: 3'- caCCCG------------GAGCCGGUCCA-------------CGGCC-C-GCU- -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 10685 | 0.68 | 0.155019 |
Target: 5'- -cGGccGCCUCGGCgGuggccgccGGUaucaaGCCGGGCGAg -3' miRNA: 3'- caCC--CGGAGCCGgU--------CCA-----CGGCCCGCU- -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 22963 | 0.68 | 0.159076 |
Target: 5'- cGUGGGgCgcccCGGUCAucGUGUCGGGCGGc -3' miRNA: 3'- -CACCCgGa---GCCGGUc-CACGGCCCGCU- -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 12595 | 0.68 | 0.159076 |
Target: 5'- cGUGGGCCUUGaacuugcccgacGCCGGGccGCCGccuGCGAg -3' miRNA: 3'- -CACCCGGAGC------------CGGUCCa-CGGCc--CGCU- -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 48063 | 0.68 | 0.167478 |
Target: 5'- -gGcGGCgUCGGCCGcuuGGcGCCGGGCc- -3' miRNA: 3'- caC-CCGgAGCCGGU---CCaCGGCCCGcu -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 31026 | 0.67 | 0.174484 |
Target: 5'- -cGGGCCgcgcucgccgaggCGGCCAGGgcGUC-GGCGAa -3' miRNA: 3'- caCCCGGa------------GCCGGUCCa-CGGcCCGCU- -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 20255 | 0.67 | 0.176276 |
Target: 5'- aUGGGCUUUcgGGCCGGGUuuuUCGGGCu- -3' miRNA: 3'- cACCCGGAG--CCGGUCCAc--GGCCCGcu -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 8771 | 0.67 | 0.176276 |
Target: 5'- -cGGGCCUUcGCCGugcGGcGgCGGGCGAc -3' miRNA: 3'- caCCCGGAGcCGGU---CCaCgGCCCGCU- -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 22889 | 0.67 | 0.190244 |
Target: 5'- -gGGcGCCUCGuguagcagauuGCUAcGG-GCCGGGCGGg -3' miRNA: 3'- caCC-CGGAGC-----------CGGU-CCaCGGCCCGCU- -5' |
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12989 | 3' | -65.9 | NC_003387.1 | + | 25865 | 0.67 | 0.190244 |
Target: 5'- gGUGGccugcaguuGCCgagCGGCCuGGUGCUccccggcguccaGGGCGGc -3' miRNA: 3'- -CACC---------CGGa--GCCGGuCCACGG------------CCCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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