Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12989 | 5' | -57.6 | NC_003387.1 | + | 47263 | 1.06 | 0.000785 |
Target: 5'- gAUCUGCCCGAGCUGACCGACGACUGAc -3' miRNA: 3'- -UAGACGGGCUCGACUGGCUGCUGACU- -5' |
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12989 | 5' | -57.6 | NC_003387.1 | + | 51914 | 0.8 | 0.071888 |
Target: 5'- -gCUGCCCGAGCUGGCCGACa----- -3' miRNA: 3'- uaGACGGGCUCGACUGGCUGcugacu -5' |
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12989 | 5' | -57.6 | NC_003387.1 | + | 26507 | 0.73 | 0.211921 |
Target: 5'- -gCUGCCCGAGgaGugcgagGCCGACGACgacGAg -3' miRNA: 3'- uaGACGGGCUCgaC------UGGCUGCUGa--CU- -5' |
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12989 | 5' | -57.6 | NC_003387.1 | + | 23372 | 0.71 | 0.281368 |
Target: 5'- --aUGgCCGAGCUGauucgggucGCCGACGAgCUGAa -3' miRNA: 3'- uagACgGGCUCGAC---------UGGCUGCU-GACU- -5' |
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12989 | 5' | -57.6 | NC_003387.1 | + | 14768 | 0.71 | 0.295784 |
Target: 5'- -gCUGCCCaAGCUGuaugacACCGACGGCUc- -3' miRNA: 3'- uaGACGGGcUCGAC------UGGCUGCUGAcu -5' |
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12989 | 5' | -57.6 | NC_003387.1 | + | 45935 | 0.7 | 0.318475 |
Target: 5'- --gUGCCCGAGCgUGuucGCCGACGGCc-- -3' miRNA: 3'- uagACGGGCUCG-AC---UGGCUGCUGacu -5' |
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12989 | 5' | -57.6 | NC_003387.1 | + | 30413 | 0.7 | 0.326323 |
Target: 5'- -gCUGCCCGAGCUGucgggugaaACCGA-GGCcGAg -3' miRNA: 3'- uaGACGGGCUCGAC---------UGGCUgCUGaCU- -5' |
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12989 | 5' | -57.6 | NC_003387.1 | + | 4470 | 0.69 | 0.385227 |
Target: 5'- ---aGCCCGAGCUGcugGCCG-CGGCcGAc -3' miRNA: 3'- uagaCGGGCUCGAC---UGGCuGCUGaCU- -5' |
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12989 | 5' | -57.6 | NC_003387.1 | + | 23932 | 0.69 | 0.385227 |
Target: 5'- -gCUGCCCG-GCUGGCucgaccggggcaCGGCGACaUGGg -3' miRNA: 3'- uaGACGGGCuCGACUG------------GCUGCUG-ACU- -5' |
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12989 | 5' | -57.6 | NC_003387.1 | + | 22630 | 0.69 | 0.4033 |
Target: 5'- ---gGCCCuGGCcGcccGCCGACGACUGAg -3' miRNA: 3'- uagaCGGGcUCGaC---UGGCUGCUGACU- -5' |
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12989 | 5' | -57.6 | NC_003387.1 | + | 32322 | 0.68 | 0.431392 |
Target: 5'- --aUGCCCGAcaugGACCGcuGCGGCUGAu -3' miRNA: 3'- uagACGGGCUcga-CUGGC--UGCUGACU- -5' |
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12989 | 5' | -57.6 | NC_003387.1 | + | 34376 | 0.67 | 0.470563 |
Target: 5'- gAUCUGCgCGGuCUGACCGGCGGg--- -3' miRNA: 3'- -UAGACGgGCUcGACUGGCUGCUgacu -5' |
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12989 | 5' | -57.6 | NC_003387.1 | + | 20126 | 0.67 | 0.480638 |
Target: 5'- ---aGCCCGAGCagGAUCGACGucaggaUGAg -3' miRNA: 3'- uagaCGGGCUCGa-CUGGCUGCug----ACU- -5' |
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12989 | 5' | -57.6 | NC_003387.1 | + | 543 | 0.67 | 0.480638 |
Target: 5'- -cCUGCCCGcgaucuGGCugcccUGACgCGGCGGCUGu -3' miRNA: 3'- uaGACGGGC------UCG-----ACUG-GCUGCUGACu -5' |
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12989 | 5' | -57.6 | NC_003387.1 | + | 6148 | 0.67 | 0.489794 |
Target: 5'- -cCUGCCCGAgGCcGAUUGggucggugagucuGCGACUGAc -3' miRNA: 3'- uaGACGGGCU-CGaCUGGC-------------UGCUGACU- -5' |
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12989 | 5' | -57.6 | NC_003387.1 | + | 15912 | 0.67 | 0.490816 |
Target: 5'- ----cCCCGAGCUGGCCG-CGAUUa- -3' miRNA: 3'- uagacGGGCUCGACUGGCuGCUGAcu -5' |
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12989 | 5' | -57.6 | NC_003387.1 | + | 44795 | 0.67 | 0.508343 |
Target: 5'- -gCUgGCCCGcgcgauccucgacgGGCUGACCGAcguCGugUGGa -3' miRNA: 3'- uaGA-CGGGC--------------UCGACUGGCU---GCugACU- -5' |
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12989 | 5' | -57.6 | NC_003387.1 | + | 45858 | 0.67 | 0.511464 |
Target: 5'- -cCUGCgCGAGCUG-CUG-CGGCUGc -3' miRNA: 3'- uaGACGgGCUCGACuGGCuGCUGACu -5' |
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12989 | 5' | -57.6 | NC_003387.1 | + | 33266 | 0.67 | 0.515637 |
Target: 5'- -cCUGCCCGGcCUGccgccgauccccgacACCGACGACg-- -3' miRNA: 3'- uaGACGGGCUcGAC---------------UGGCUGCUGacu -5' |
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12989 | 5' | -57.6 | NC_003387.1 | + | 49222 | 0.67 | 0.521923 |
Target: 5'- gAUCUGCCgGucgaGGC-GGCCGAgCGGCUGc -3' miRNA: 3'- -UAGACGGgC----UCGaCUGGCU-GCUGACu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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