Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 12989 | 5' | -57.6 | NC_003387.1 | + | 45935 | 0.7 | 0.318475 |
|
Target: 5'- --gUGCCCGAGCgUGuucGCCGACGGCc-- -3' miRNA: 3'- uagACGGGCUCG-AC---UGGCUGCUGacu -5' |
|||||||
| 12989 | 5' | -57.6 | NC_003387.1 | + | 14768 | 0.71 | 0.295784 |
|
Target: 5'- -gCUGCCCaAGCUGuaugacACCGACGGCUc- -3' miRNA: 3'- uaGACGGGcUCGAC------UGGCUGCUGAcu -5' |
|||||||
| 12989 | 5' | -57.6 | NC_003387.1 | + | 23372 | 0.71 | 0.281368 |
|
Target: 5'- --aUGgCCGAGCUGauucgggucGCCGACGAgCUGAa -3' miRNA: 3'- uagACgGGCUCGAC---------UGGCUGCU-GACU- -5' |
|||||||
| 12989 | 5' | -57.6 | NC_003387.1 | + | 26507 | 0.73 | 0.211921 |
|
Target: 5'- -gCUGCCCGAGgaGugcgagGCCGACGACgacGAg -3' miRNA: 3'- uaGACGGGCUCgaC------UGGCUGCUGa--CU- -5' |
|||||||
| 12989 | 5' | -57.6 | NC_003387.1 | + | 51914 | 0.8 | 0.071888 |
|
Target: 5'- -gCUGCCCGAGCUGGCCGACa----- -3' miRNA: 3'- uaGACGGGCUCGACUGGCUGcugacu -5' |
|||||||
| 12989 | 5' | -57.6 | NC_003387.1 | + | 47263 | 1.06 | 0.000785 |
|
Target: 5'- gAUCUGCCCGAGCUGACCGACGACUGAc -3' miRNA: 3'- -UAGACGGGCUCGACUGGCUGCUGACU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home