Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12990 | 5' | -59.8 | NC_003387.1 | + | 491 | 0.67 | 0.432316 |
Target: 5'- gCUCGUCGcGaugCGCGCcCGCGUGgcgaccgCGGUu -3' miRNA: 3'- -GAGCAGC-Cg--GCGUGaGCGCACa------GCCA- -5' |
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12990 | 5' | -59.8 | NC_003387.1 | + | 1227 | 0.7 | 0.290719 |
Target: 5'- gCUCGUCGaGCUGCuccugcccggucugGCguUCGCGgUGUCGGUu -3' miRNA: 3'- -GAGCAGC-CGGCG--------------UG--AGCGC-ACAGCCA- -5' |
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12990 | 5' | -59.8 | NC_003387.1 | + | 4187 | 0.66 | 0.489996 |
Target: 5'- cCUCGgcgcggugcuUCGGCC--AC-CGCGUGUCGGc -3' miRNA: 3'- -GAGC----------AGCCGGcgUGaGCGCACAGCCa -5' |
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12990 | 5' | -59.8 | NC_003387.1 | + | 4970 | 0.75 | 0.128451 |
Target: 5'- --gGUCaGGCCGUGCUCGCGcagagGUCGGUc -3' miRNA: 3'- gagCAG-CCGGCGUGAGCGCa----CAGCCA- -5' |
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12990 | 5' | -59.8 | NC_003387.1 | + | 5031 | 0.7 | 0.272201 |
Target: 5'- -aCGagGGCgGCGCUgCGCGaGUCGGUg -3' miRNA: 3'- gaGCagCCGgCGUGA-GCGCaCAGCCA- -5' |
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12990 | 5' | -59.8 | NC_003387.1 | + | 5320 | 0.75 | 0.135548 |
Target: 5'- gCUCGgggCGGggccgguugccCCGCGCUUGCgGUGUCGGUg -3' miRNA: 3'- -GAGCa--GCC-----------GGCGUGAGCG-CACAGCCA- -5' |
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12990 | 5' | -59.8 | NC_003387.1 | + | 5767 | 0.67 | 0.432316 |
Target: 5'- -gCGgaacCGGCCGCGCUCGCcg--CGGa -3' miRNA: 3'- gaGCa---GCCGGCGUGAGCGcacaGCCa -5' |
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12990 | 5' | -59.8 | NC_003387.1 | + | 6369 | 0.67 | 0.441658 |
Target: 5'- gCUUGgccUCGGCCGCGggcgacgcCUUGCGUGggCGGc -3' miRNA: 3'- -GAGC---AGCCGGCGU--------GAGCGCACa-GCCa -5' |
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12990 | 5' | -59.8 | NC_003387.1 | + | 7893 | 0.7 | 0.285825 |
Target: 5'- --gGUCGGCCGCACUCGUgcccgcgcgcacGUGU-GGc -3' miRNA: 3'- gagCAGCCGGCGUGAGCG------------CACAgCCa -5' |
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12990 | 5' | -59.8 | NC_003387.1 | + | 10194 | 0.66 | 0.499962 |
Target: 5'- -gCGUCGGUcaugCGgGC-CGCGUGaUCGGUc -3' miRNA: 3'- gaGCAGCCG----GCgUGaGCGCAC-AGCCA- -5' |
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12990 | 5' | -59.8 | NC_003387.1 | + | 11700 | 0.68 | 0.378794 |
Target: 5'- gUCGUCgGGCuCGCugUCGCGauUUGGg -3' miRNA: 3'- gAGCAG-CCG-GCGugAGCGCacAGCCa -5' |
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12990 | 5' | -59.8 | NC_003387.1 | + | 17480 | 0.66 | 0.510017 |
Target: 5'- gUCGUCGG-CGUACUUGCGggcgccgCGGc -3' miRNA: 3'- gAGCAGCCgGCGUGAGCGCaca----GCCa -5' |
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12990 | 5' | -59.8 | NC_003387.1 | + | 19444 | 0.69 | 0.30726 |
Target: 5'- -gCGUUaaGGCCGUGCgggCGCGUGUCaGUg -3' miRNA: 3'- gaGCAG--CCGGCGUGa--GCGCACAGcCA- -5' |
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12990 | 5' | -59.8 | NC_003387.1 | + | 20499 | 0.71 | 0.234457 |
Target: 5'- gCUCGUCGcGCuCGCGCagcgcggcgUCGCGcucGUCGGUg -3' miRNA: 3'- -GAGCAGC-CG-GCGUG---------AGCGCa--CAGCCA- -5' |
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12990 | 5' | -59.8 | NC_003387.1 | + | 22668 | 0.68 | 0.353752 |
Target: 5'- -cCGUCaGGgCGCGCUCGUGgg-CGGUg -3' miRNA: 3'- gaGCAG-CCgGCGUGAGCGCacaGCCA- -5' |
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12990 | 5' | -59.8 | NC_003387.1 | + | 22730 | 0.7 | 0.299981 |
Target: 5'- --aGUCGGgCGUACUCGCG-GUCGc- -3' miRNA: 3'- gagCAGCCgGCGUGAGCGCaCAGCca -5' |
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12990 | 5' | -59.8 | NC_003387.1 | + | 26798 | 0.75 | 0.131955 |
Target: 5'- cCUCGacgaGGCCGCGCUgGUG-GUCGGUg -3' miRNA: 3'- -GAGCag--CCGGCGUGAgCGCaCAGCCA- -5' |
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12990 | 5' | -59.8 | NC_003387.1 | + | 29654 | 0.66 | 0.489996 |
Target: 5'- -cUGUCGGCCuugcGCACggcguagUGCGUGaUCGGc -3' miRNA: 3'- gaGCAGCCGG----CGUGa------GCGCAC-AGCCa -5' |
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12990 | 5' | -59.8 | NC_003387.1 | + | 29866 | 0.66 | 0.499962 |
Target: 5'- uUCGUCGGCgaggGCGCUUuCGUGUugaCGGg -3' miRNA: 3'- gAGCAGCCGg---CGUGAGcGCACA---GCCa -5' |
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12990 | 5' | -59.8 | NC_003387.1 | + | 30747 | 0.68 | 0.370315 |
Target: 5'- gCUCGUCGGgCaGCAC---CGUGUCGGg -3' miRNA: 3'- -GAGCAGCCgG-CGUGagcGCACAGCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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