miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12991 5' -59.7 NC_003387.1 + 7274 0.67 0.428666
Target:  5'- uGGCuccaCGGCGCAGGCCCgGC-GAGc-- -3'
miRNA:   3'- -CUGug--GCCGCGUCCGGG-CGuCUUagc -5'
12991 5' -59.7 NC_003387.1 + 4961 0.67 0.427731
Target:  5'- aGACcaGCCGGU-CAGGCCgugcucgCGCAGAgGUCGg -3'
miRNA:   3'- -CUG--UGGCCGcGUCCGG-------GCGUCU-UAGC- -5'
12991 5' -59.7 NC_003387.1 + 4926 0.67 0.419372
Target:  5'- uGC-CCGGCGCGGcGUCgCGCGuuGUCGa -3'
miRNA:   3'- cUGuGGCCGCGUC-CGG-GCGUcuUAGC- -5'
12991 5' -59.7 NC_003387.1 + 27205 0.67 0.419372
Target:  5'- cGCaACCGGCGCAaGUCUGCGG--UCGa -3'
miRNA:   3'- cUG-UGGCCGCGUcCGGGCGUCuuAGC- -5'
12991 5' -59.7 NC_003387.1 + 26709 0.67 0.410202
Target:  5'- cGACGCCGucguGCGCGGcGCgaGCuGGAUCGc -3'
miRNA:   3'- -CUGUGGC----CGCGUC-CGggCGuCUUAGC- -5'
12991 5' -59.7 NC_003387.1 + 49212 0.67 0.410202
Target:  5'- gGGCACUGGCGCcGGUUCguucgacaGCAGuuuGUCGa -3'
miRNA:   3'- -CUGUGGCCGCGuCCGGG--------CGUCu--UAGC- -5'
12991 5' -59.7 NC_003387.1 + 18219 0.67 0.401158
Target:  5'- cGACgACCGGCGaccuGGucGCCCGCGGGuUUGg -3'
miRNA:   3'- -CUG-UGGCCGCg---UC--CGGGCGUCUuAGC- -5'
12991 5' -59.7 NC_003387.1 + 16977 0.67 0.401158
Target:  5'- -uCACCuGGCGCGGGCgggCUGCGucAUCGa -3'
miRNA:   3'- cuGUGG-CCGCGUCCG---GGCGUcuUAGC- -5'
12991 5' -59.7 NC_003387.1 + 31012 0.67 0.392242
Target:  5'- cGACcaggUCGGCGCGGGCCgCGCucgccGAggCGg -3'
miRNA:   3'- -CUGu---GGCCGCGUCCGG-GCGu----CUuaGC- -5'
12991 5' -59.7 NC_003387.1 + 4534 0.67 0.392242
Target:  5'- -cCGCCGGUGCGGGCaCCuuGCGGGc--- -3'
miRNA:   3'- cuGUGGCCGCGUCCG-GG--CGUCUuagc -5'
12991 5' -59.7 NC_003387.1 + 44275 0.67 0.392242
Target:  5'- gGGCGCCGcCGCAGGUCaGCGGGugugcUCGa -3'
miRNA:   3'- -CUGUGGCcGCGUCCGGgCGUCUu----AGC- -5'
12991 5' -59.7 NC_003387.1 + 48202 0.67 0.392242
Target:  5'- cGCACCGGCgGCGGcggccgagguGaCCCGCAcGAUCGu -3'
miRNA:   3'- cUGUGGCCG-CGUC----------C-GGGCGUcUUAGC- -5'
12991 5' -59.7 NC_003387.1 + 47166 0.67 0.392242
Target:  5'- gGGCACC-GCGguGGCCCuGguG-GUCGc -3'
miRNA:   3'- -CUGUGGcCGCguCCGGG-CguCuUAGC- -5'
12991 5' -59.7 NC_003387.1 + 16365 0.67 0.392242
Target:  5'- uGCGCCGucaUGCAGGCCCGUcGuuUCGc -3'
miRNA:   3'- cUGUGGCc--GCGUCCGGGCGuCuuAGC- -5'
12991 5' -59.7 NC_003387.1 + 10409 0.67 0.383456
Target:  5'- cGGCGCuCGGCaaGCAguacGGCUCGCGGcuGUCGg -3'
miRNA:   3'- -CUGUG-GCCG--CGU----CCGGGCGUCu-UAGC- -5'
12991 5' -59.7 NC_003387.1 + 30689 0.68 0.374801
Target:  5'- cGCACCGGCGgGGGCguuuucgugcgcCUGCGGGG-CGc -3'
miRNA:   3'- cUGUGGCCGCgUCCG------------GGCGUCUUaGC- -5'
12991 5' -59.7 NC_003387.1 + 42363 0.68 0.357893
Target:  5'- -cUugCGGCcCAGGCCCuuacCGGggUCGg -3'
miRNA:   3'- cuGugGCCGcGUCCGGGc---GUCuuAGC- -5'
12991 5' -59.7 NC_003387.1 + 14097 0.68 0.349641
Target:  5'- aGCGCCaGCGC-GGCCUGCGGGc--- -3'
miRNA:   3'- cUGUGGcCGCGuCCGGGCGUCUuagc -5'
12991 5' -59.7 NC_003387.1 + 37789 0.68 0.347192
Target:  5'- cGCGCCugGGCGCAGcaCCCGCGGucgcagcagcgcgcGAUCGg -3'
miRNA:   3'- cUGUGG--CCGCGUCc-GGGCGUC--------------UUAGC- -5'
12991 5' -59.7 NC_003387.1 + 40429 0.68 0.341526
Target:  5'- --uGCCGGUGCccGGCCCGCuGAucCGg -3'
miRNA:   3'- cugUGGCCGCGu-CCGGGCGuCUuaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.