miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12992 3' -52.4 NC_003387.1 + 52374 0.66 0.864332
Target:  5'- -aCUGUCACGUUUG-CGGCGagccaauCGACu -3'
miRNA:   3'- caGACAGUGCAAGCuGUUGCgc-----GCUG- -5'
12992 3' -52.4 NC_003387.1 + 4480 0.66 0.847299
Target:  5'- -gCUGgcCGCGgcCGACcGgGCGCGACa -3'
miRNA:   3'- caGACa-GUGCaaGCUGuUgCGCGCUG- -5'
12992 3' -52.4 NC_003387.1 + 7324 0.66 0.847299
Target:  5'- ---cGUCACGaUCGGCu-CGgGCGGCc -3'
miRNA:   3'- cagaCAGUGCaAGCUGuuGCgCGCUG- -5'
12992 3' -52.4 NC_003387.1 + 31892 0.66 0.847299
Target:  5'- ---cGUCGC---CGACGuCGCGCGACg -3'
miRNA:   3'- cagaCAGUGcaaGCUGUuGCGCGCUG- -5'
12992 3' -52.4 NC_003387.1 + 43149 0.66 0.847299
Target:  5'- -cCUGcaccgCACGUUCGGCGGCGacaaGuCGAUg -3'
miRNA:   3'- caGACa----GUGCAAGCUGUUGCg---C-GCUG- -5'
12992 3' -52.4 NC_003387.1 + 37300 0.66 0.847299
Target:  5'- cGUCgg-CGCGgucgUCGACcGCGC-CGACg -3'
miRNA:   3'- -CAGacaGUGCa---AGCUGuUGCGcGCUG- -5'
12992 3' -52.4 NC_003387.1 + 22458 0.66 0.838425
Target:  5'- cGUUggccUCGCGguacUCGACGAC-CGCGGCg -3'
miRNA:   3'- -CAGac--AGUGCa---AGCUGUUGcGCGCUG- -5'
12992 3' -52.4 NC_003387.1 + 18707 0.66 0.838425
Target:  5'- ---gGUCGCGcagCGcCAGgGCGCGGCa -3'
miRNA:   3'- cagaCAGUGCaa-GCuGUUgCGCGCUG- -5'
12992 3' -52.4 NC_003387.1 + 32195 0.66 0.829326
Target:  5'- -gCUG-CGCGUcgucacCGACGA-GCGCGACg -3'
miRNA:   3'- caGACaGUGCAa-----GCUGUUgCGCGCUG- -5'
12992 3' -52.4 NC_003387.1 + 49144 0.67 0.819069
Target:  5'- -cCUGUaCACGUgUCGGugcacacCAGCGCGCaGGCg -3'
miRNA:   3'- caGACA-GUGCA-AGCU-------GUUGCGCG-CUG- -5'
12992 3' -52.4 NC_003387.1 + 15619 0.67 0.810491
Target:  5'- cGUCgagCACG-UCGAgGGCGCGCacGGCg -3'
miRNA:   3'- -CAGacaGUGCaAGCUgUUGCGCG--CUG- -5'
12992 3' -52.4 NC_003387.1 + 38218 0.67 0.810491
Target:  5'- ---cGUCGgGUcgaUCGACAGCGCGCc-- -3'
miRNA:   3'- cagaCAGUgCA---AGCUGUUGCGCGcug -5'
12992 3' -52.4 NC_003387.1 + 1602 0.67 0.800777
Target:  5'- -cCUGgCAUGUUCGGCcgGGCGCGUgugGGCa -3'
miRNA:   3'- caGACaGUGCAAGCUG--UUGCGCG---CUG- -5'
12992 3' -52.4 NC_003387.1 + 50181 0.67 0.800777
Target:  5'- aUCUGcCGCGg-CGACcGCGUGCGGa -3'
miRNA:   3'- cAGACaGUGCaaGCUGuUGCGCGCUg -5'
12992 3' -52.4 NC_003387.1 + 28428 0.67 0.780808
Target:  5'- -aCUGaUCACGUgaUCGGCGcgcACGCcgagGCGGCg -3'
miRNA:   3'- caGAC-AGUGCA--AGCUGU---UGCG----CGCUG- -5'
12992 3' -52.4 NC_003387.1 + 14909 0.68 0.749682
Target:  5'- -gCUG-CACGacgUGACGGCuGCGCGGCu -3'
miRNA:   3'- caGACaGUGCaa-GCUGUUG-CGCGCUG- -5'
12992 3' -52.4 NC_003387.1 + 6362 0.68 0.739042
Target:  5'- --gUGUCGCGcuuggccUCGGCcGCGgGCGACg -3'
miRNA:   3'- cagACAGUGCa------AGCUGuUGCgCGCUG- -5'
12992 3' -52.4 NC_003387.1 + 1249 0.68 0.739042
Target:  5'- gGUCUGgcguUCGCGgugUCGguugcgguGCGGCuGCGCGGCg -3'
miRNA:   3'- -CAGAC----AGUGCa--AGC--------UGUUG-CGCGCUG- -5'
12992 3' -52.4 NC_003387.1 + 10898 0.69 0.706497
Target:  5'- aGUU--UCACGUcagCGGCGACGCGCuGCa -3'
miRNA:   3'- -CAGacAGUGCAa--GCUGUUGCGCGcUG- -5'
12992 3' -52.4 NC_003387.1 + 448 0.69 0.695481
Target:  5'- aGUCUGUCGCcgccgCGGCGGCcgacggcgaccgGCGCGAg -3'
miRNA:   3'- -CAGACAGUGcaa--GCUGUUG------------CGCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.