Results 21 - 40 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12992 | 5' | -60.9 | NC_003387.1 | + | 964 | 0.66 | 0.364375 |
Target: 5'- cGGGCGG-GUAGUuguguaUGCCGCcGCCgaGGCGc -3' miRNA: 3'- -CCCGUCaCGUCG------AUGGCG-UGGg-CCGU- -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 7338 | 0.66 | 0.364375 |
Target: 5'- cGGGCGGccgggcGCAGCUaACCGC---CGGCAa -3' miRNA: 3'- -CCCGUCa-----CGUCGA-UGGCGuggGCCGU- -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 7799 | 0.66 | 0.364375 |
Target: 5'- aGGuGCAG-GCcgAGCUGCaaCGCCUGGCGg -3' miRNA: 3'- -CC-CGUCaCG--UCGAUGgcGUGGGCCGU- -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 27977 | 0.66 | 0.364375 |
Target: 5'- uGGcCGGUGCcGUUGCgGCGCCCucgauuucGGCGa -3' miRNA: 3'- cCC-GUCACGuCGAUGgCGUGGG--------CCGU- -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 7527 | 0.66 | 0.363535 |
Target: 5'- aGGGUgaacgagAGcgGCAcuGCUGCCGC-CCUGGCc -3' miRNA: 3'- -CCCG-------UCa-CGU--CGAUGGCGuGGGCCGu -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 43852 | 0.66 | 0.361861 |
Target: 5'- gGGGCGGUGCAccaguGCUauaucgcgugggccAUCGCGCaCGGUg -3' miRNA: 3'- -CCCGUCACGU-----CGA--------------UGGCGUGgGCCGu -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 23823 | 0.67 | 0.356042 |
Target: 5'- cGGGCGGUGgccCGGCgcCCGCGCCUaagccgccGCAg -3' miRNA: 3'- -CCCGUCAC---GUCGauGGCGUGGGc-------CGU- -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 48091 | 0.67 | 0.356042 |
Target: 5'- cGGGUGGcGCuGCcGCUGCGCCC-GCGg -3' miRNA: 3'- -CCCGUCaCGuCGaUGGCGUGGGcCGU- -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 44508 | 0.67 | 0.356042 |
Target: 5'- cGGCAGuUGCGucuGUucgUGCCGggcCGCCCGGCGc -3' miRNA: 3'- cCCGUC-ACGU---CG---AUGGC---GUGGGCCGU- -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 49684 | 0.67 | 0.356042 |
Target: 5'- -aGCAGUGCugAGCgUGCa--GCCCGGCAu -3' miRNA: 3'- ccCGUCACG--UCG-AUGgcgUGGGCCGU- -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 36036 | 0.67 | 0.356041 |
Target: 5'- uGGGCGuGUucucgucguaauGCAGCUugaucGCCGaCACCUGGUc -3' miRNA: 3'- -CCCGU-CA------------CGUCGA-----UGGC-GUGGGCCGu -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 12199 | 0.67 | 0.356041 |
Target: 5'- cGGGCAG-GUcGCUGCUcgGUGCCgGGCc -3' miRNA: 3'- -CCCGUCaCGuCGAUGG--CGUGGgCCGu -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 3240 | 0.67 | 0.355215 |
Target: 5'- cGGCgAGUcaugggaGCAaCUGCUGCGCCUGGCc -3' miRNA: 3'- cCCG-UCA-------CGUcGAUGGCGUGGGCCGu -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 7844 | 0.67 | 0.347843 |
Target: 5'- cGGCGGcUGCgucAGCUcgGCCaGCACCuugCGGCAg -3' miRNA: 3'- cCCGUC-ACG---UCGA--UGG-CGUGG---GCCGU- -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 49591 | 0.67 | 0.347843 |
Target: 5'- cGGGCGGUggccugGCAguGCUGCCGCuggCGGCc -3' miRNA: 3'- -CCCGUCA------CGU--CGAUGGCGuggGCCGu -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 3838 | 0.67 | 0.347843 |
Target: 5'- aGGGCGGcgcgguagGCGGC-GCCGacgAUCCGGCu -3' miRNA: 3'- -CCCGUCa-------CGUCGaUGGCg--UGGGCCGu -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 18306 | 0.67 | 0.33978 |
Target: 5'- cGGCc--GCGGCggUgGCGCCCGGCAa -3' miRNA: 3'- cCCGucaCGUCGauGgCGUGGGCCGU- -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 36758 | 0.67 | 0.33978 |
Target: 5'- uGGGCGucaccGU-CAGCgACCgGCACUCGGCGc -3' miRNA: 3'- -CCCGU-----CAcGUCGaUGG-CGUGGGCCGU- -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 21948 | 0.67 | 0.33978 |
Target: 5'- gGGGCGGcggcaggcgucUGCGGCgcuguucaacUACggUGCGCCCGGUg -3' miRNA: 3'- -CCCGUC-----------ACGUCG----------AUG--GCGUGGGCCGu -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 17722 | 0.67 | 0.33978 |
Target: 5'- aGGCGGUGC-GCc-CCG-GCCCGGCc -3' miRNA: 3'- cCCGUCACGuCGauGGCgUGGGCCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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