miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12993 3' -60.2 NC_003387.1 + 14517 0.66 0.429355
Target:  5'- -gGUGCgCcuGCGUGCGguacUCGGCGgCCGg -3'
miRNA:   3'- ugCACG-GucCGCACGU----AGCUGCgGGC- -5'
12993 3' -60.2 NC_003387.1 + 44524 0.66 0.429355
Target:  5'- uCGUGCCGGGCc-GCc-CGGCGCCg- -3'
miRNA:   3'- uGCACGGUCCGcaCGuaGCUGCGGgc -5'
12993 3' -60.2 NC_003387.1 + 52545 0.66 0.423801
Target:  5'- gGCG-GCCGGGCGUcacuuucgugaccgaGCG-CGAgugguagcaaacCGCCCGg -3'
miRNA:   3'- -UGCaCGGUCCGCA---------------CGUaGCU------------GCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 31311 0.66 0.420122
Target:  5'- ---cGCCGGGCcgccggggGCGUUGGCGUCCa -3'
miRNA:   3'- ugcaCGGUCCGca------CGUAGCUGCGGGc -5'
12993 3' -60.2 NC_003387.1 + 18035 0.66 0.419206
Target:  5'- aGCGUGCCcgAGGCG-GCGUuucagaacuucacCGGCguuGCCCa -3'
miRNA:   3'- -UGCACGG--UCCGCaCGUA-------------GCUG---CGGGc -5'
12993 3' -60.2 NC_003387.1 + 30237 0.67 0.411011
Target:  5'- cGCGccaguugGCCGGGuCGUcgGgGUCGGCGCCgGg -3'
miRNA:   3'- -UGCa------CGGUCC-GCA--CgUAGCUGCGGgC- -5'
12993 3' -60.2 NC_003387.1 + 24839 0.67 0.411011
Target:  5'- gGCGgcugGCCGGGCuccUGC-UCGAcCGCgCCGg -3'
miRNA:   3'- -UGCa---CGGUCCGc--ACGuAGCU-GCG-GGC- -5'
12993 3' -60.2 NC_003387.1 + 43683 0.67 0.411011
Target:  5'- cGCGauCCuGGCGUGgAUCGccgacgGCGCCCGc -3'
miRNA:   3'- -UGCacGGuCCGCACgUAGC------UGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 11369 0.67 0.402024
Target:  5'- gACG-GCCGGGuCGUcguuugcgGCgAUCGGCGCCaCGc -3'
miRNA:   3'- -UGCaCGGUCC-GCA--------CG-UAGCUGCGG-GC- -5'
12993 3' -60.2 NC_003387.1 + 27910 0.67 0.402024
Target:  5'- cGCG-GCCuugaccGGCG-GCGUgGGCGCCuCGg -3'
miRNA:   3'- -UGCaCGGu-----CCGCaCGUAgCUGCGG-GC- -5'
12993 3' -60.2 NC_003387.1 + 24384 0.67 0.393162
Target:  5'- uCGcGCCGacguacaGCGgcGCAUCGACGCCCa -3'
miRNA:   3'- uGCaCGGUc------CGCa-CGUAGCUGCGGGc -5'
12993 3' -60.2 NC_003387.1 + 33476 0.67 0.375824
Target:  5'- -aGUcGCCgAGGCG---GUCGGCGCCCGc -3'
miRNA:   3'- ugCA-CGG-UCCGCacgUAGCUGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 41015 0.67 0.375824
Target:  5'- gACG-GCCGGGuCGacUGCGUCGACGgcgacauugacaCCCa -3'
miRNA:   3'- -UGCaCGGUCC-GC--ACGUAGCUGC------------GGGc -5'
12993 3' -60.2 NC_003387.1 + 34051 0.67 0.367351
Target:  5'- gGCGUGUgGGGCG-GCcUaaGCGCCCa -3'
miRNA:   3'- -UGCACGgUCCGCaCGuAgcUGCGGGc -5'
12993 3' -60.2 NC_003387.1 + 37259 0.67 0.367351
Target:  5'- aACGUGUCGGcccGCGUgGCGgucaaGGCGCCUGg -3'
miRNA:   3'- -UGCACGGUC---CGCA-CGUag---CUGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 20479 0.68 0.35901
Target:  5'- gACG-GCCAGGCGgucgGCcagcucGUCG-CGCUCGc -3'
miRNA:   3'- -UGCaCGGUCCGCa---CG------UAGCuGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 12216 0.68 0.35407
Target:  5'- -gGUGCCGGGCcaccggcggucgccaGcGCAgCGGCGCUCGg -3'
miRNA:   3'- ugCACGGUCCG---------------CaCGUaGCUGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 38663 0.68 0.35407
Target:  5'- uCGUGCCAGGCGcccauccgcugaaagUGCGgguGCGCCgGa -3'
miRNA:   3'- uGCACGGUCCGC---------------ACGUagcUGCGGgC- -5'
12993 3' -60.2 NC_003387.1 + 50139 0.68 0.350803
Target:  5'- uGCG-GCCAGGCGUcgaccgacGgGUCGGCGUacaCGg -3'
miRNA:   3'- -UGCaCGGUCCGCA--------CgUAGCUGCGg--GC- -5'
12993 3' -60.2 NC_003387.1 + 3229 0.68 0.349989
Target:  5'- cACGUcgacGCCGGGCGggcGCAcCGgccgaaaccaaguGCGCCCGu -3'
miRNA:   3'- -UGCA----CGGUCCGCa--CGUaGC-------------UGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.