miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12993 5' -56.3 NC_003387.1 + 48785 0.67 0.556781
Target:  5'- gCC---AGCUCGCCGCUGA-UCGCCg -3'
miRNA:   3'- gGGuuuUCGGGCGGCGAUUgGGUGGa -5'
12993 5' -56.3 NC_003387.1 + 23338 0.67 0.578419
Target:  5'- -gCAGGAuGaCCCGCUGCUcACCCGCg- -3'
miRNA:   3'- ggGUUUU-C-GGGCGGCGAuUGGGUGga -5'
12993 5' -56.3 NC_003387.1 + 36654 0.67 0.578419
Target:  5'- cCCCGAGuggcaucaccGGCUCGCCGacCUGGCCgcguuCACCg -3'
miRNA:   3'- -GGGUUU----------UCGGGCGGC--GAUUGG-----GUGGa -5'
12993 5' -56.3 NC_003387.1 + 3886 0.67 0.578419
Target:  5'- gCCGGAaccGGCgCCGCUGCccGACCCugACCg -3'
miRNA:   3'- gGGUUU---UCG-GGCGGCGa-UUGGG--UGGa -5'
12993 5' -56.3 NC_003387.1 + 7206 0.67 0.600233
Target:  5'- gUCAAugguGGCCgCGgUGCUGACCCgGCCg -3'
miRNA:   3'- gGGUUu---UCGG-GCgGCGAUUGGG-UGGa -5'
12993 5' -56.3 NC_003387.1 + 17286 0.67 0.567574
Target:  5'- cCCCGAcAGCUaacaGCCgGCgAAUCCGCCa -3'
miRNA:   3'- -GGGUUuUCGGg---CGG-CGaUUGGGUGGa -5'
12993 5' -56.3 NC_003387.1 + 3172 0.67 0.578419
Target:  5'- uCCgCGGAGGCCCucgcaGCCGCggaGGCCaACCa -3'
miRNA:   3'- -GG-GUUUUCGGG-----CGGCGa--UUGGgUGGa -5'
12993 5' -56.3 NC_003387.1 + 37902 0.67 0.589308
Target:  5'- cCCCGAGGGCgacCCGCUGCccgguggcucGGCaCCGCCg -3'
miRNA:   3'- -GGGUUUUCG---GGCGGCGa---------UUG-GGUGGa -5'
12993 5' -56.3 NC_003387.1 + 47708 0.67 0.589308
Target:  5'- gCCCucguGAGCCUGCCGUgcuggucgAACCaCGCg- -3'
miRNA:   3'- -GGGuu--UUCGGGCGGCGa-------UUGG-GUGga -5'
12993 5' -56.3 NC_003387.1 + 39858 0.67 0.589308
Target:  5'- gCCAGAcggcaaagacaGGCCCGCCGgUGcgguguccACgCCGCCc -3'
miRNA:   3'- gGGUUU-----------UCGGGCGGCgAU--------UG-GGUGGa -5'
12993 5' -56.3 NC_003387.1 + 34401 0.67 0.589308
Target:  5'- -aCGAcGGCCaCGCCGUUGccggGCgCCACCg -3'
miRNA:   3'- ggGUUuUCGG-GCGGCGAU----UG-GGUGGa -5'
12993 5' -56.3 NC_003387.1 + 42916 0.67 0.578419
Target:  5'- uCCCAAucGAGCgacCCGUCGUcgaaagcgcGACCCGCCa -3'
miRNA:   3'- -GGGUU--UUCG---GGCGGCGa--------UUGGGUGGa -5'
12993 5' -56.3 NC_003387.1 + 45029 0.67 0.578419
Target:  5'- aCUCGAuAGCCCGgCGUgAACCCgaacggGCCg -3'
miRNA:   3'- -GGGUUuUCGGGCgGCGaUUGGG------UGGa -5'
12993 5' -56.3 NC_003387.1 + 28981 0.67 0.578419
Target:  5'- -gCGGGAcGCCCGaCCGCUGGaUCGCCUg -3'
miRNA:   3'- ggGUUUU-CGGGC-GGCGAUUgGGUGGA- -5'
12993 5' -56.3 NC_003387.1 + 3482 0.67 0.556781
Target:  5'- cCCCGGcgucGAGCa-GCCGCUcGgCCGCCUc -3'
miRNA:   3'- -GGGUU----UUCGggCGGCGAuUgGGUGGA- -5'
12993 5' -56.3 NC_003387.1 + 42217 0.67 0.556781
Target:  5'- gCCGAgccGAGCgCC-CCGCUGAUCUugCUg -3'
miRNA:   3'- gGGUU---UUCG-GGcGGCGAUUGGGugGA- -5'
12993 5' -56.3 NC_003387.1 + 15573 0.67 0.556781
Target:  5'- aCCAugcGCCCGCCcaGCgaguGCCCaACCa -3'
miRNA:   3'- gGGUuuuCGGGCGG--CGau--UGGG-UGGa -5'
12993 5' -56.3 NC_003387.1 + 35354 0.67 0.600233
Target:  5'- gCCGAgacAGGCUCGCCGC--ACCUgaucGCCg -3'
miRNA:   3'- gGGUU---UUCGGGCGGCGauUGGG----UGGa -5'
12993 5' -56.3 NC_003387.1 + 18957 0.67 0.555705
Target:  5'- gCCAAAcgcucgcGGCgCCGCCGUU-GCCCuuGCCg -3'
miRNA:   3'- gGGUUU-------UCG-GGCGGCGAuUGGG--UGGa -5'
12993 5' -56.3 NC_003387.1 + 27140 0.67 0.589308
Target:  5'- gCCGu--GCCCGCCGggGucgGCgCCGCCg -3'
miRNA:   3'- gGGUuuuCGGGCGGCgaU---UG-GGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.