Results 21 - 40 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12993 | 5' | -56.3 | NC_003387.1 | + | 22612 | 0.67 | 0.600233 |
Target: 5'- gCUCA--GGCCCuuGCgGCgguACCCGCCg -3' miRNA: 3'- -GGGUuuUCGGG--CGgCGau-UGGGUGGa -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 37902 | 0.67 | 0.589308 |
Target: 5'- cCCCGAGGGCgacCCGCUGCccgguggcucGGCaCCGCCg -3' miRNA: 3'- -GGGUUUUCG---GGCGGCGa---------UUG-GGUGGa -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 27140 | 0.67 | 0.589308 |
Target: 5'- gCCGu--GCCCGCCGggGucgGCgCCGCCg -3' miRNA: 3'- gGGUuuuCGGGCGGCgaU---UG-GGUGGa -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 47708 | 0.67 | 0.589308 |
Target: 5'- gCCCucguGAGCCUGCCGUgcuggucgAACCaCGCg- -3' miRNA: 3'- -GGGuu--UUCGGGCGGCGa-------UUGG-GUGga -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 34401 | 0.67 | 0.589308 |
Target: 5'- -aCGAcGGCCaCGCCGUUGccggGCgCCACCg -3' miRNA: 3'- ggGUUuUCGG-GCGGCGAU----UG-GGUGGa -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 50007 | 0.67 | 0.589308 |
Target: 5'- gCCu---GCCCGCCGCccGCgUCGCCg -3' miRNA: 3'- gGGuuuuCGGGCGGCGauUG-GGUGGa -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 39858 | 0.67 | 0.589308 |
Target: 5'- gCCAGAcggcaaagacaGGCCCGCCGgUGcgguguccACgCCGCCc -3' miRNA: 3'- gGGUUU-----------UCGGGCGGCgAU--------UG-GGUGGa -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 1936 | 0.67 | 0.586037 |
Target: 5'- gCCCGAuccgcgacgcAGGCgguuggggcugggaCCGCCGC-GACCCgACCUg -3' miRNA: 3'- -GGGUU----------UUCG--------------GGCGGCGaUUGGG-UGGA- -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 3172 | 0.67 | 0.578419 |
Target: 5'- uCCgCGGAGGCCCucgcaGCCGCggaGGCCaACCa -3' miRNA: 3'- -GG-GUUUUCGGG-----CGGCGa--UUGGgUGGa -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 23338 | 0.67 | 0.578419 |
Target: 5'- -gCAGGAuGaCCCGCUGCUcACCCGCg- -3' miRNA: 3'- ggGUUUU-C-GGGCGGCGAuUGGGUGga -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 3886 | 0.67 | 0.578419 |
Target: 5'- gCCGGAaccGGCgCCGCUGCccGACCCugACCg -3' miRNA: 3'- gGGUUU---UCG-GGCGGCGa-UUGGG--UGGa -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 36654 | 0.67 | 0.578419 |
Target: 5'- cCCCGAGuggcaucaccGGCUCGCCGacCUGGCCgcguuCACCg -3' miRNA: 3'- -GGGUUU----------UCGGGCGGC--GAUUGG-----GUGGa -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 46674 | 0.67 | 0.578419 |
Target: 5'- gCUCGAAccuGCCCGgCGCccuGCCgCACCUc -3' miRNA: 3'- -GGGUUUu--CGGGCgGCGau-UGG-GUGGA- -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 30058 | 0.67 | 0.578419 |
Target: 5'- nCCAcGAGCgCGCC-CUGACggCCGCCg -3' miRNA: 3'- gGGUuUUCGgGCGGcGAUUG--GGUGGa -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 42916 | 0.67 | 0.578419 |
Target: 5'- uCCCAAucGAGCgacCCGUCGUcgaaagcgcGACCCGCCa -3' miRNA: 3'- -GGGUU--UUCG---GGCGGCGa--------UUGGGUGGa -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 45029 | 0.67 | 0.578419 |
Target: 5'- aCUCGAuAGCCCGgCGUgAACCCgaacggGCCg -3' miRNA: 3'- -GGGUUuUCGGGCgGCGaUUGGG------UGGa -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 28981 | 0.67 | 0.578419 |
Target: 5'- -gCGGGAcGCCCGaCCGCUGGaUCGCCUg -3' miRNA: 3'- ggGUUUU-CGGGC-GGCGAUUgGGUGGA- -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 17286 | 0.67 | 0.567574 |
Target: 5'- cCCCGAcAGCUaacaGCCgGCgAAUCCGCCa -3' miRNA: 3'- -GGGUUuUCGGg---CGG-CGaUUGGGUGGa -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 32069 | 0.67 | 0.556781 |
Target: 5'- gCCGAgcGCCCGuUCGC--GCUCACCg -3' miRNA: 3'- gGGUUuuCGGGC-GGCGauUGGGUGGa -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 23832 | 0.67 | 0.556781 |
Target: 5'- gCCCGGc-GCCCGCgC-CUAAgCCGCCg -3' miRNA: 3'- -GGGUUuuCGGGCG-GcGAUUgGGUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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