miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12994 3' -54.2 NC_003387.1 + 48741 1.13 0.00076
Target:  5'- cCGCCUCAAUCCUCGGGAACGUCACGCa -3'
miRNA:   3'- -GCGGAGUUAGGAGCCCUUGCAGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 11509 0.67 0.716458
Target:  5'- uGCCUaCGAUCgUCGGccuGCGUguCGCc -3'
miRNA:   3'- gCGGA-GUUAGgAGCCcu-UGCAguGCG- -5'
12994 3' -54.2 NC_003387.1 + 31873 0.68 0.693861
Target:  5'- gCGCCUUGcugaccuAUCCcgUCGccGACGUCGCGCg -3'
miRNA:   3'- -GCGGAGU-------UAGG--AGCccUUGCAGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 32563 0.68 0.673186
Target:  5'- gCGcCCUCGAcgcCCUCGGGu---UCGCGCu -3'
miRNA:   3'- -GC-GGAGUUa--GGAGCCCuugcAGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 51186 0.69 0.636988
Target:  5'- aCGCCUggCGAUCCUCGGcaccGAggugcugagccugcACGUCGgcCGCg -3'
miRNA:   3'- -GCGGA--GUUAGGAGCC----CU--------------UGCAGU--GCG- -5'
12994 3' -54.2 NC_003387.1 + 51431 0.69 0.585431
Target:  5'- cCGCCUCGAaCUgcgcCGGucGAACGcCGCGCa -3'
miRNA:   3'- -GCGGAGUUaGGa---GCC--CUUGCaGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 50629 0.66 0.807841
Target:  5'- aGCCUaCAAUgucgaacuucaCCgcCGaGGAccGCGUCGCGCa -3'
miRNA:   3'- gCGGA-GUUA-----------GGa-GC-CCU--UGCAGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 29351 0.67 0.748078
Target:  5'- gCGCUUC-AUCCUCGGcGAccugacCGUCagcgGCGCc -3'
miRNA:   3'- -GCGGAGuUAGGAGCC-CUu-----GCAG----UGCG- -5'
12994 3' -54.2 NC_003387.1 + 43330 0.67 0.705737
Target:  5'- gCGCCgggCAAuuUCCUgcucgcgggcCGGGAGCGgCACGa -3'
miRNA:   3'- -GCGGa--GUU--AGGA----------GCCCUUGCaGUGCg -5'
12994 3' -54.2 NC_003387.1 + 11692 0.68 0.662244
Target:  5'- uCGCCgCGGUCgUCGGGcucGCuGUCGCGa -3'
miRNA:   3'- -GCGGaGUUAGgAGCCCu--UG-CAGUGCg -5'
12994 3' -54.2 NC_003387.1 + 34519 0.75 0.294326
Target:  5'- gCGCCgCGAUCCUCGGGcugccCGUCGaccCGCu -3'
miRNA:   3'- -GCGGaGUUAGGAGCCCuu---GCAGU---GCG- -5'
12994 3' -54.2 NC_003387.1 + 23735 0.66 0.778641
Target:  5'- gCGCaggCGAUCCagCGGucGGGCGUCcCGCa -3'
miRNA:   3'- -GCGga-GUUAGGa-GCC--CUUGCAGuGCG- -5'
12994 3' -54.2 NC_003387.1 + 31175 0.7 0.531531
Target:  5'- uGCCUCGGUgC-CGGGcggcACGUCgaACGCg -3'
miRNA:   3'- gCGGAGUUAgGaGCCCu---UGCAG--UGCG- -5'
12994 3' -54.2 NC_003387.1 + 39640 0.68 0.694944
Target:  5'- aGCCUCGA-CC-CGG---UGUCGCGCa -3'
miRNA:   3'- gCGGAGUUaGGaGCCcuuGCAGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 21690 0.66 0.807841
Target:  5'- aCGCC-CuggccgCCUCGGcGAGCGcggccCGCGCc -3'
miRNA:   3'- -GCGGaGuua---GGAGCC-CUUGCa----GUGCG- -5'
12994 3' -54.2 NC_003387.1 + 1295 0.7 0.552911
Target:  5'- gCGCCUCGAcgCCcuggCGGGcGACGUCgACGa -3'
miRNA:   3'- -GCGGAGUUa-GGa---GCCC-UUGCAG-UGCg -5'
12994 3' -54.2 NC_003387.1 + 38788 0.67 0.716458
Target:  5'- aCGCUguaCAG-CCUCGGcGGCGUCAUGg -3'
miRNA:   3'- -GCGGa--GUUaGGAGCCcUUGCAGUGCg -5'
12994 3' -54.2 NC_003387.1 + 43398 0.68 0.661148
Target:  5'- aCGaCgUCGA-CCUCGGGGGCcgugucaGUCGCGUu -3'
miRNA:   3'- -GC-GgAGUUaGGAGCCCUUG-------CAGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 43319 0.68 0.662244
Target:  5'- gGCC-CAcUCCUCGGcGAuCGUCuuGCc -3'
miRNA:   3'- gCGGaGUuAGGAGCC-CUuGCAGugCG- -5'
12994 3' -54.2 NC_003387.1 + 45919 0.68 0.68409
Target:  5'- gCGCCUUGAgCCgcaGGGcgaccAUGUCGCGCu -3'
miRNA:   3'- -GCGGAGUUaGGag-CCCu----UGCAGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.