miRNA display CGI


Results 21 - 40 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12994 3' -54.2 NC_003387.1 + 31873 0.68 0.693861
Target:  5'- gCGCCUUGcugaccuAUCCcgUCGccGACGUCGCGCg -3'
miRNA:   3'- -GCGGAGU-------UAGG--AGCccUUGCAGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 45919 0.68 0.68409
Target:  5'- gCGCCUUGAgCCgcaGGGcgaccAUGUCGCGCu -3'
miRNA:   3'- -GCGGAGUUaGGag-CCCu----UGCAGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 32563 0.68 0.673186
Target:  5'- gCGcCCUCGAcgcCCUCGGGu---UCGCGCu -3'
miRNA:   3'- -GC-GGAGUUa--GGAGCCCuugcAGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 43319 0.68 0.662244
Target:  5'- gGCC-CAcUCCUCGGcGAuCGUCuuGCc -3'
miRNA:   3'- gCGGaGUuAGGAGCC-CUuGCAGugCG- -5'
12994 3' -54.2 NC_003387.1 + 11692 0.68 0.662244
Target:  5'- uCGCCgCGGUCgUCGGGcucGCuGUCGCGa -3'
miRNA:   3'- -GCGGaGUUAGgAGCCCu--UG-CAGUGCg -5'
12994 3' -54.2 NC_003387.1 + 43398 0.68 0.661148
Target:  5'- aCGaCgUCGA-CCUCGGGGGCcgugucaGUCGCGUu -3'
miRNA:   3'- -GC-GgAGUUaGGAGCCCUUG-------CAGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 2976 0.69 0.640286
Target:  5'- gGCCUCG---CUCGGGGccucGCGagGCGCu -3'
miRNA:   3'- gCGGAGUuagGAGCCCU----UGCagUGCG- -5'
12994 3' -54.2 NC_003387.1 + 51186 0.69 0.636988
Target:  5'- aCGCCUggCGAUCCUCGGcaccGAggugcugagccugcACGUCGgcCGCg -3'
miRNA:   3'- -GCGGA--GUUAGGAGCC----CU--------------UGCAGU--GCG- -5'
12994 3' -54.2 NC_003387.1 + 35523 0.69 0.629291
Target:  5'- uGCCUCGG-CCUCGGccACuuUCGCGCc -3'
miRNA:   3'- gCGGAGUUaGGAGCCcuUGc-AGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 36843 0.69 0.629291
Target:  5'- uGuCCUC-GUCCUCGGGcagccacAUGUaCGCGCg -3'
miRNA:   3'- gC-GGAGuUAGGAGCCCu------UGCA-GUGCG- -5'
12994 3' -54.2 NC_003387.1 + 51431 0.69 0.585431
Target:  5'- cCGCCUCGAaCUgcgcCGGucGAACGcCGCGCa -3'
miRNA:   3'- -GCGGAGUUaGGa---GCC--CUUGCaGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 44849 0.7 0.577803
Target:  5'- cCGaCCUCAAggucggugccguagCCgUCGGGGGCGUCggcgauuccgccuGCGCg -3'
miRNA:   3'- -GC-GGAGUUa-------------GG-AGCCCUUGCAG-------------UGCG- -5'
12994 3' -54.2 NC_003387.1 + 51165 0.7 0.574541
Target:  5'- gCGCUUCGccGUCCUCGGGGccgaggucgaacAgGUCGUGCc -3'
miRNA:   3'- -GCGGAGU--UAGGAGCCCU------------UgCAGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 1295 0.7 0.552911
Target:  5'- gCGCCUCGAcgCCcuggCGGGcGACGUCgACGa -3'
miRNA:   3'- -GCGGAGUUa-GGa---GCCC-UUGCAG-UGCg -5'
12994 3' -54.2 NC_003387.1 + 11852 0.7 0.542186
Target:  5'- uCGCCgcggaAAUCCgaccacauugugUCGGuGAgcGCGUCGCGCa -3'
miRNA:   3'- -GCGGag---UUAGG------------AGCC-CU--UGCAGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 31175 0.7 0.531531
Target:  5'- uGCCUCGGUgC-CGGGcggcACGUCgaACGCg -3'
miRNA:   3'- gCGGAGUUAgGaGCCCu---UGCAG--UGCG- -5'
12994 3' -54.2 NC_003387.1 + 26218 0.7 0.531531
Target:  5'- gGCCUCGcacUCCUCGGGcAGCG-CAuucuuagcCGCa -3'
miRNA:   3'- gCGGAGUu--AGGAGCCC-UUGCaGU--------GCG- -5'
12994 3' -54.2 NC_003387.1 + 10426 0.71 0.510457
Target:  5'- aCGCCUUGAUCgUCGGG-GCGaaauagucgCACGUa -3'
miRNA:   3'- -GCGGAGUUAGgAGCCCuUGCa--------GUGCG- -5'
12994 3' -54.2 NC_003387.1 + 27674 0.72 0.459429
Target:  5'- gGCCgUCAG-CCgCGGGuAACGgUCACGCa -3'
miRNA:   3'- gCGG-AGUUaGGaGCCC-UUGC-AGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 1754 0.72 0.459429
Target:  5'- gGCCgcuAUCggCUCGGGGGCGcuUCGCGCu -3'
miRNA:   3'- gCGGaguUAG--GAGCCCUUGC--AGUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.