miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12994 5' -61.1 NC_003387.1 + 193 0.66 0.414452
Target:  5'- cCGGC-C-GCCAGCUCGgCgGCUuGUCGc -3'
miRNA:   3'- -GCCGcGuCGGUCGAGC-GgCGAcUAGC- -5'
12994 5' -61.1 NC_003387.1 + 257 0.66 0.396533
Target:  5'- aGcGUGCAguGCCcuGGCUgCGCCGCgccGGUCGa -3'
miRNA:   3'- gC-CGCGU--CGG--UCGA-GCGGCGa--CUAGC- -5'
12994 5' -61.1 NC_003387.1 + 479 0.69 0.252622
Target:  5'- cCGGCGCgAGCU-GCUCGUCGCgaUGcgCGc -3'
miRNA:   3'- -GCCGCG-UCGGuCGAGCGGCG--ACuaGC- -5'
12994 5' -61.1 NC_003387.1 + 1297 0.69 0.265499
Target:  5'- cCGGCGCAGUUcgaGGCggCGCCGCaGGcgcUCGc -3'
miRNA:   3'- -GCCGCGUCGG---UCGa-GCGGCGaCU---AGC- -5'
12994 5' -61.1 NC_003387.1 + 3197 0.67 0.353979
Target:  5'- aGGCcaaccaGCAGCgcaAGCUCGCCGCgaagCGu -3'
miRNA:   3'- gCCG------CGUCGg--UCGAGCGGCGacuaGC- -5'
12994 5' -61.1 NC_003387.1 + 3841 0.67 0.345864
Target:  5'- gCGGCGCGGUaGGCggCGCCGaC-GAUCc -3'
miRNA:   3'- -GCCGCGUCGgUCGa-GCGGC-GaCUAGc -5'
12994 5' -61.1 NC_003387.1 + 5711 0.69 0.246379
Target:  5'- gGGCGU-GCCcGCgUCGUCGCUGAcCGg -3'
miRNA:   3'- gCCGCGuCGGuCG-AGCGGCGACUaGC- -5'
12994 5' -61.1 NC_003387.1 + 5767 0.77 0.073883
Target:  5'- gCGGaacCGGCCGcGCUCGCCGCgGAUCGa -3'
miRNA:   3'- -GCCgc-GUCGGU-CGAGCGGCGaCUAGC- -5'
12994 5' -61.1 NC_003387.1 + 6862 0.68 0.307313
Target:  5'- gGcGCGCAGCCgcagcAGCUCGC-GCagGAUCu -3'
miRNA:   3'- gC-CGCGUCGG-----UCGAGCGgCGa-CUAGc -5'
12994 5' -61.1 NC_003387.1 + 7013 0.68 0.300008
Target:  5'- -cGCGCAG-CAGCUCGgCCGCUu-UCGc -3'
miRNA:   3'- gcCGCGUCgGUCGAGC-GGCGAcuAGC- -5'
12994 5' -61.1 NC_003387.1 + 7048 0.69 0.240264
Target:  5'- aGGCcCGGCC-GCUCGCC-CUGAcCGg -3'
miRNA:   3'- gCCGcGUCGGuCGAGCGGcGACUaGC- -5'
12994 5' -61.1 NC_003387.1 + 7940 0.71 0.195806
Target:  5'- -cGCGCgGGCCAGCUUGUCGa-GGUCGg -3'
miRNA:   3'- gcCGCG-UCGGUCGAGCGGCgaCUAGC- -5'
12994 5' -61.1 NC_003387.1 + 9672 0.69 0.258995
Target:  5'- gCGGUGCggGGUCAGCUCGCCcgucuugagGUUGA-CGa -3'
miRNA:   3'- -GCCGCG--UCGGUCGAGCGG---------CGACUaGC- -5'
12994 5' -61.1 NC_003387.1 + 10191 0.73 0.124651
Target:  5'- uCGGCGuCGGUCAuGCggGCCGCgUGAUCGg -3'
miRNA:   3'- -GCCGC-GUCGGU-CGagCGGCG-ACUAGC- -5'
12994 5' -61.1 NC_003387.1 + 10415 0.73 0.124651
Target:  5'- uCGGCaaGCAGUaCGGCUCGCgGCUG-UCGg -3'
miRNA:   3'- -GCCG--CGUCG-GUCGAGCGgCGACuAGC- -5'
12994 5' -61.1 NC_003387.1 + 10841 0.67 0.322328
Target:  5'- uGGaGCuucGCCAGCUCGCCGaccgcGGUCu -3'
miRNA:   3'- gCCgCGu--CGGUCGAGCGGCga---CUAGc -5'
12994 5' -61.1 NC_003387.1 + 11388 0.71 0.190783
Target:  5'- gCGGCGaucggcGCCAcGCUgGCCGC-GAUCGg -3'
miRNA:   3'- -GCCGCgu----CGGU-CGAgCGGCGaCUAGC- -5'
12994 5' -61.1 NC_003387.1 + 11436 0.69 0.252622
Target:  5'- uCGGUGCucguGCCcgcgcugcAGCUCGCCGCcgGggCGc -3'
miRNA:   3'- -GCCGCGu---CGG--------UCGAGCGGCGa-CuaGC- -5'
12994 5' -61.1 NC_003387.1 + 11616 0.7 0.228414
Target:  5'- cCGGUcguGCAGCgccagCAGCUCGCgGCUcacGAUCGc -3'
miRNA:   3'- -GCCG---CGUCG-----GUCGAGCGgCGA---CUAGC- -5'
12994 5' -61.1 NC_003387.1 + 11791 0.68 0.292839
Target:  5'- uGGCGa--CCAGCUCGCCGUccAUCa -3'
miRNA:   3'- gCCGCgucGGUCGAGCGGCGacUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.