miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12995 3' -56.3 NC_003387.1 + 52404 0.66 0.658449
Target:  5'- -gCGuGCGUGUCGCc---GGGCUcGGGCu -3'
miRNA:   3'- caGC-UGCACAGCGuuacCCCGA-CCUG- -5'
12995 3' -56.3 NC_003387.1 + 27924 0.66 0.658449
Target:  5'- -gCGGCGUGggCGCcucggggGGGGCUcggucgGGGCg -3'
miRNA:   3'- caGCUGCACa-GCGuua----CCCCGA------CCUG- -5'
12995 3' -56.3 NC_003387.1 + 19595 0.66 0.644155
Target:  5'- cGUCGACGUGUgGCAGUcguuccuugacgccGcgaaGGGCgcgacGGGCg -3'
miRNA:   3'- -CAGCUGCACAgCGUUA--------------C----CCCGa----CCUG- -5'
12995 3' -56.3 NC_003387.1 + 28363 0.66 0.614433
Target:  5'- -gCGuCGUGUCGCA---GGGC-GGGCg -3'
miRNA:   3'- caGCuGCACAGCGUuacCCCGaCCUG- -5'
12995 3' -56.3 NC_003387.1 + 22692 0.66 0.603444
Target:  5'- uGUCGACGgcggCGC--UGGcGGCcUGGGCg -3'
miRNA:   3'- -CAGCUGCaca-GCGuuACC-CCG-ACCUG- -5'
12995 3' -56.3 NC_003387.1 + 10986 0.66 0.603444
Target:  5'- aUCGGCGgcGcCGCAAaGGGuaUGGGCg -3'
miRNA:   3'- cAGCUGCa-CaGCGUUaCCCcgACCUG- -5'
12995 3' -56.3 NC_003387.1 + 23895 0.67 0.559819
Target:  5'- -cCGACGUGcugCGCGccgaGGGGCUGaACg -3'
miRNA:   3'- caGCUGCACa--GCGUua--CCCCGACcUG- -5'
12995 3' -56.3 NC_003387.1 + 754 0.67 0.549038
Target:  5'- -gCGACGUGUggCGCGAUGGGcCUcGGGu -3'
miRNA:   3'- caGCUGCACA--GCGUUACCCcGA-CCUg -5'
12995 3' -56.3 NC_003387.1 + 37013 0.69 0.455728
Target:  5'- uUCcGCGUGUaCGCAAUGGauauGGCcGGGCa -3'
miRNA:   3'- cAGcUGCACA-GCGUUACC----CCGaCCUG- -5'
12995 3' -56.3 NC_003387.1 + 26395 0.7 0.407706
Target:  5'- cGUCGGCuac-CGCAAUGcugaucGGGCUGGGCa -3'
miRNA:   3'- -CAGCUGcacaGCGUUAC------CCCGACCUG- -5'
12995 3' -56.3 NC_003387.1 + 45231 0.7 0.398487
Target:  5'- -gUGGCGUgGUCGgAGUcgauGGGCUGGACg -3'
miRNA:   3'- caGCUGCA-CAGCgUUAc---CCCGACCUG- -5'
12995 3' -56.3 NC_003387.1 + 49508 1.1 0.000586
Target:  5'- cGUCGACGUGUCGCAAUGGGGCUGGACg -3'
miRNA:   3'- -CAGCUGCACAGCGUUACCCCGACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.