miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12995 5' -56.4 NC_003387.1 + 7688 0.65 0.694345
Target:  5'- cCCGuuCGGGUUCACgCCGGgcuaucgagugacgUUGCGGa -3'
miRNA:   3'- -GGCucGUCCGAGUGgGGCU--------------AAUGCCg -5'
12995 5' -56.4 NC_003387.1 + 7171 0.66 0.686852
Target:  5'- aCGAGCuGGCggcggaUCGCCuuGccgcACGGCc -3'
miRNA:   3'- gGCUCGuCCG------AGUGGggCuaa-UGCCG- -5'
12995 5' -56.4 NC_003387.1 + 47579 0.66 0.686852
Target:  5'- aCCGAcCGGcGCcgagCGCCCCucgucGcgUGCGGCg -3'
miRNA:   3'- -GGCUcGUC-CGa---GUGGGG-----CuaAUGCCG- -5'
12995 5' -56.4 NC_003387.1 + 49303 0.66 0.685779
Target:  5'- gCCGAGCacgccgaGGGCacgGCCCCGAgcaugaucGCGcGCa -3'
miRNA:   3'- -GGCUCG-------UCCGag-UGGGGCUaa------UGC-CG- -5'
12995 5' -56.4 NC_003387.1 + 35408 0.66 0.684706
Target:  5'- gCCGAGUucGUcgagauUCACCCCGAguucgacaccCGGCu -3'
miRNA:   3'- -GGCUCGucCG------AGUGGGGCUaau-------GCCG- -5'
12995 5' -56.4 NC_003387.1 + 50198 0.66 0.683633
Target:  5'- aCCGGGaCGGcaacgacgacccgcGCgUCACCUgGAcUUACGGCg -3'
miRNA:   3'- -GGCUC-GUC--------------CG-AGUGGGgCU-AAUGCCG- -5'
12995 5' -56.4 NC_003387.1 + 48228 0.66 0.676105
Target:  5'- gUCGAGCggggccuccgcGGGCUCGgCCUuc--GCGGCg -3'
miRNA:   3'- -GGCUCG-----------UCCGAGUgGGGcuaaUGCCG- -5'
12995 5' -56.4 NC_003387.1 + 31019 0.66 0.676105
Target:  5'- gUCGGcGCGGGCcgCGCUcgCCGAg-GCGGCc -3'
miRNA:   3'- -GGCU-CGUCCGa-GUGG--GGCUaaUGCCG- -5'
12995 5' -56.4 NC_003387.1 + 16024 0.66 0.676105
Target:  5'- aCCGGGUcgAGauucaGCUUGCCCgCGGUgaacGCGGCc -3'
miRNA:   3'- -GGCUCG--UC-----CGAGUGGG-GCUAa---UGCCG- -5'
12995 5' -56.4 NC_003387.1 + 9750 0.66 0.676105
Target:  5'- gUCGGcCAGGCUCACgcgcaugCCGgg-GCGGCa -3'
miRNA:   3'- -GGCUcGUCCGAGUGg------GGCuaaUGCCG- -5'
12995 5' -56.4 NC_003387.1 + 4890 0.66 0.676105
Target:  5'- uUCGA-CAGGCUgAUCugCCGggUGCGGUa -3'
miRNA:   3'- -GGCUcGUCCGAgUGG--GGCuaAUGCCG- -5'
12995 5' -56.4 NC_003387.1 + 4075 0.66 0.676105
Target:  5'- nCGuGCGGGUUCugCCgcaugcucgCGAcccGCGGCg -3'
miRNA:   3'- gGCuCGUCCGAGugGG---------GCUaa-UGCCG- -5'
12995 5' -56.4 NC_003387.1 + 17628 0.66 0.675028
Target:  5'- aCGAGCcggaaugcgugccAGGC-CACCgCGAUUAgGuGCu -3'
miRNA:   3'- gGCUCG-------------UCCGaGUGGgGCUAAUgC-CG- -5'
12995 5' -56.4 NC_003387.1 + 22570 0.66 0.675028
Target:  5'- gCGGGCcuggucgAGGgUgGCCUCGGU-GCGGCc -3'
miRNA:   3'- gGCUCG-------UCCgAgUGGGGCUAaUGCCG- -5'
12995 5' -56.4 NC_003387.1 + 2247 0.66 0.675028
Target:  5'- aCGAGUacaccaagGGGCUgcgugggCGCCCCGAggUGCccgagGGCg -3'
miRNA:   3'- gGCUCG--------UCCGA-------GUGGGGCUa-AUG-----CCG- -5'
12995 5' -56.4 NC_003387.1 + 14106 0.66 0.665317
Target:  5'- gCGGccuGCGGGCcgaacagCGCCUCGAUcacCGGCa -3'
miRNA:   3'- gGCU---CGUCCGa------GUGGGGCUAau-GCCG- -5'
12995 5' -56.4 NC_003387.1 + 34308 0.66 0.665317
Target:  5'- cCCGAGCAGcccGCgCugCCC----GCGGCc -3'
miRNA:   3'- -GGCUCGUC---CGaGugGGGcuaaUGCCG- -5'
12995 5' -56.4 NC_003387.1 + 41944 0.66 0.665317
Target:  5'- aUCGAGCccauuucgucgAGGCUCguACCggCGAUcGCGGCc -3'
miRNA:   3'- -GGCUCG-----------UCCGAG--UGGg-GCUAaUGCCG- -5'
12995 5' -56.4 NC_003387.1 + 23297 0.66 0.665317
Target:  5'- aCCGcGCGGGC-CGCUgCG---GCGGCc -3'
miRNA:   3'- -GGCuCGUCCGaGUGGgGCuaaUGCCG- -5'
12995 5' -56.4 NC_003387.1 + 36621 0.66 0.6545
Target:  5'- gCGGcuGCuGGC-CGCCgCGAUgcccgACGGCg -3'
miRNA:   3'- gGCU--CGuCCGaGUGGgGCUAa----UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.