miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12996 3' -50.5 NC_003387.1 + 49928 1.13 0.00154
Target:  5'- cGCCGAAAAGUCAGCAAACGCCCUGAGg -3'
miRNA:   3'- -CGGCUUUUCAGUCGUUUGCGGGACUC- -5'
12996 3' -50.5 NC_003387.1 + 29249 0.67 0.873639
Target:  5'- gGCCGAcAAGGUCgagcaguacgaGGCGauggcaacccgcaucGACGCCCUGu- -3'
miRNA:   3'- -CGGCU-UUUCAG-----------UCGU---------------UUGCGGGACuc -5'
12996 3' -50.5 NC_003387.1 + 32533 0.67 0.886305
Target:  5'- gGCCGugcGAGgcgCAGCAGcgcaucaaccGCGCCCUcGAc -3'
miRNA:   3'- -CGGCuu-UUCa--GUCGUU----------UGCGGGA-CUc -5'
12996 3' -50.5 NC_003387.1 + 30010 0.66 0.927245
Target:  5'- cCCGAcuGGUCGGUAu-CGCCCa--- -3'
miRNA:   3'- cGGCUuuUCAGUCGUuuGCGGGacuc -5'
12996 3' -50.5 NC_003387.1 + 29018 0.71 0.654476
Target:  5'- cCCGuccGAAGUCAGCAAacaGCGCCCc--- -3'
miRNA:   3'- cGGCu--UUUCAGUCGUU---UGCGGGacuc -5'
12996 3' -50.5 NC_003387.1 + 52635 0.71 0.688608
Target:  5'- uGCaGggGAGUCgagccAGCAAACGCCCg--- -3'
miRNA:   3'- -CGgCuuUUCAG-----UCGUUUGCGGGacuc -5'
12996 3' -50.5 NC_003387.1 + 52667 0.7 0.721103
Target:  5'- cGCCGAucGAgcgcguuugugcaGGUCAGC-GAC-CCCUGGGg -3'
miRNA:   3'- -CGGCU--UU-------------UCAGUCGuUUGcGGGACUC- -5'
12996 3' -50.5 NC_003387.1 + 27083 0.7 0.733235
Target:  5'- uGCCGcagcaguGGGUCGGCAucguCGUCCUGGu -3'
miRNA:   3'- -CGGCuu-----UUCAGUCGUuu--GCGGGACUc -5'
12996 3' -50.5 NC_003387.1 + 49636 0.68 0.835338
Target:  5'- aGCCG----GUCGGCGAGCuugGCCCcGAGu -3'
miRNA:   3'- -CGGCuuuuCAGUCGUUUG---CGGGaCUC- -5'
12996 3' -50.5 NC_003387.1 + 7441 0.67 0.870363
Target:  5'- aCCGAgugAAGGUCGGCGAgaACGCgaUGGGc -3'
miRNA:   3'- cGGCU---UUUCAGUCGUU--UGCGggACUC- -5'
12996 3' -50.5 NC_003387.1 + 30440 0.67 0.861987
Target:  5'- gGCCGAGGcgguGGcCgAGCAcGGCGCCCUGc- -3'
miRNA:   3'- -CGGCUUU----UCaG-UCGU-UUGCGGGACuc -5'
12996 3' -50.5 NC_003387.1 + 13668 0.69 0.780264
Target:  5'- cGCCGAGGGcgccgucgacgcuauGUCGGCGuuCGUCCcGAGc -3'
miRNA:   3'- -CGGCUUUU---------------CAGUCGUuuGCGGGaCUC- -5'
12996 3' -50.5 NC_003387.1 + 15261 0.84 0.131105
Target:  5'- cGCCGAGAAGUCGGUcGACGCCgagGAGa -3'
miRNA:   3'- -CGGCUUUUCAGUCGuUUGCGGga-CUC- -5'
12996 3' -50.5 NC_003387.1 + 19859 0.67 0.861987
Target:  5'- cGCCGAcg---CGGCGcugGGCGCCCUGc- -3'
miRNA:   3'- -CGGCUuuucaGUCGU---UUGCGGGACuc -5'
12996 3' -50.5 NC_003387.1 + 48875 0.79 0.270699
Target:  5'- aGCCGGAucGUCGGCGccgccuaccgcGCGCCCUGAc -3'
miRNA:   3'- -CGGCUUuuCAGUCGUu----------UGCGGGACUc -5'
12996 3' -50.5 NC_003387.1 + 37832 0.7 0.754941
Target:  5'- gGCCGAgcGAGGUCgGGCAccccuGCGCCCg--- -3'
miRNA:   3'- -CGGCU--UUUCAG-UCGUu----UGCGGGacuc -5'
12996 3' -50.5 NC_003387.1 + 2374 0.67 0.870363
Target:  5'- cUUGAGcguGGUCGGCuaccgcAACGCCCUGGc -3'
miRNA:   3'- cGGCUUu--UCAGUCGu-----UUGCGGGACUc -5'
12996 3' -50.5 NC_003387.1 + 45662 0.67 0.878472
Target:  5'- cGCCGAAGguguccGGUCagGGCGAGCGgCC-GGGc -3'
miRNA:   3'- -CGGCUUU------UCAG--UCGUUUGCgGGaCUC- -5'
12996 3' -50.5 NC_003387.1 + 52595 0.75 0.475782
Target:  5'- cGgCGAGcGAGcUCAGCAAacACGCCCUGAc -3'
miRNA:   3'- -CgGCUU-UUC-AGUCGUU--UGCGGGACUc -5'
12996 3' -50.5 NC_003387.1 + 21670 0.71 0.699884
Target:  5'- gGCCGAGcacguGUUcGCcGACGCCCUGGc -3'
miRNA:   3'- -CGGCUUuu---CAGuCGuUUGCGGGACUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.