miRNA display CGI


Results 21 - 40 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12996 3' -50.5 NC_003387.1 + 8779 0.67 0.886305
Target:  5'- cGCCGugcGG-CGGCGGGCGaCCUGAu -3'
miRNA:   3'- -CGGCuuuUCaGUCGUUUGCgGGACUc -5'
12996 3' -50.5 NC_003387.1 + 34066 0.67 0.886305
Target:  5'- cUCGAAAucGGUUAGCGGGCGgCC-GAGu -3'
miRNA:   3'- cGGCUUU--UCAGUCGUUUGCgGGaCUC- -5'
12996 3' -50.5 NC_003387.1 + 32533 0.67 0.886305
Target:  5'- gGCCGugcGAGgcgCAGCAGcgcaucaaccGCGCCCUcGAc -3'
miRNA:   3'- -CGGCuu-UUCa--GUCGUU----------UGCGGGA-CUc -5'
12996 3' -50.5 NC_003387.1 + 45662 0.67 0.878472
Target:  5'- cGCCGAAGguguccGGUCagGGCGAGCGgCC-GGGc -3'
miRNA:   3'- -CGGCUUU------UCAG--UCGUUUGCgGGaCUC- -5'
12996 3' -50.5 NC_003387.1 + 34549 0.67 0.877673
Target:  5'- aGCCGAuc-GUCAGCGggucgacgucGAacucgaugccaacCGCCUUGAGg -3'
miRNA:   3'- -CGGCUuuuCAGUCGU----------UU-------------GCGGGACUC- -5'
12996 3' -50.5 NC_003387.1 + 29249 0.67 0.873639
Target:  5'- gGCCGAcAAGGUCgagcaguacgaGGCGauggcaacccgcaucGACGCCCUGu- -3'
miRNA:   3'- -CGGCU-UUUCAG-----------UCGU---------------UUGCGGGACuc -5'
12996 3' -50.5 NC_003387.1 + 2374 0.67 0.870363
Target:  5'- cUUGAGcguGGUCGGCuaccgcAACGCCCUGGc -3'
miRNA:   3'- cGGCUUu--UCAGUCGu-----UUGCGGGACUc -5'
12996 3' -50.5 NC_003387.1 + 7441 0.67 0.870363
Target:  5'- aCCGAgugAAGGUCGGCGAgaACGCgaUGGGc -3'
miRNA:   3'- cGGCU---UUUCAGUCGUU--UGCGggACUC- -5'
12996 3' -50.5 NC_003387.1 + 1560 0.67 0.861987
Target:  5'- gGCCccGAGGaCGGCGAagcgccuaACGCCCUGGc -3'
miRNA:   3'- -CGGcuUUUCaGUCGUU--------UGCGGGACUc -5'
12996 3' -50.5 NC_003387.1 + 30440 0.67 0.861987
Target:  5'- gGCCGAGGcgguGGcCgAGCAcGGCGCCCUGc- -3'
miRNA:   3'- -CGGCUUU----UCaG-UCGU-UUGCGGGACuc -5'
12996 3' -50.5 NC_003387.1 + 19859 0.67 0.861987
Target:  5'- cGCCGAcg---CGGCGcugGGCGCCCUGc- -3'
miRNA:   3'- -CGGCUuuucaGUCGU---UUGCGGGACuc -5'
12996 3' -50.5 NC_003387.1 + 24525 0.68 0.844466
Target:  5'- uGCCGAGcugcAGGUC-GC---CGCCCUGAa -3'
miRNA:   3'- -CGGCUU----UUCAGuCGuuuGCGGGACUc -5'
12996 3' -50.5 NC_003387.1 + 7166 0.68 0.844466
Target:  5'- uGCCGAcGAGcuggCGGCGGAuCGCCUUGc- -3'
miRNA:   3'- -CGGCUuUUCa---GUCGUUU-GCGGGACuc -5'
12996 3' -50.5 NC_003387.1 + 49112 0.68 0.835338
Target:  5'- cCCGcucAGcUCGGCcaGGACGCCCUGAa -3'
miRNA:   3'- cGGCuuuUC-AGUCG--UUUGCGGGACUc -5'
12996 3' -50.5 NC_003387.1 + 11546 0.68 0.835338
Target:  5'- cGCCGAAAcGGUgcgacCGGCcgcacuCGCCCUGAc -3'
miRNA:   3'- -CGGCUUU-UCA-----GUCGuuu---GCGGGACUc -5'
12996 3' -50.5 NC_003387.1 + 49636 0.68 0.835338
Target:  5'- aGCCG----GUCGGCGAGCuugGCCCcGAGu -3'
miRNA:   3'- -CGGCuuuuCAGUCGUUUG---CGGGaCUC- -5'
12996 3' -50.5 NC_003387.1 + 44281 0.68 0.835338
Target:  5'- cGCCGc-AGGUCAGCGggUGUgCUcGAGu -3'
miRNA:   3'- -CGGCuuUUCAGUCGUuuGCGgGA-CUC- -5'
12996 3' -50.5 NC_003387.1 + 18474 0.68 0.825979
Target:  5'- cGgCGAucAGcCGGuCGAGCGCCCcGAGg -3'
miRNA:   3'- -CgGCUuuUCaGUC-GUUUGCGGGaCUC- -5'
12996 3' -50.5 NC_003387.1 + 42731 0.68 0.8164
Target:  5'- cGCgGGAAcgGGUCGGguG-CGCCCUGcGg -3'
miRNA:   3'- -CGgCUUU--UCAGUCguUuGCGGGACuC- -5'
12996 3' -50.5 NC_003387.1 + 13668 0.69 0.780264
Target:  5'- cGCCGAGGGcgccgucgacgcuauGUCGGCGuuCGUCCcGAGc -3'
miRNA:   3'- -CGGCUUUU---------------CAGUCGUuuGCGGGaCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.