Results 21 - 40 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12997 | 5' | -55.6 | NC_003387.1 | + | 37993 | 0.68 | 0.571445 |
Target: 5'- aCGCCUGGcugCGCGAccgcagcaaGCCGUgcacCGCAa -3' miRNA: 3'- -GCGGACCa--GUGCUag-------CGGCAau--GCGU- -5' |
|||||||
12997 | 5' | -55.6 | NC_003387.1 | + | 37080 | 0.68 | 0.560647 |
Target: 5'- uCGCCgacaUGGUCGaccUCGCCGU-GCGCGc -3' miRNA: 3'- -GCGG----ACCAGUgcuAGCGGCAaUGCGU- -5' |
|||||||
12997 | 5' | -55.6 | NC_003387.1 | + | 23413 | 0.68 | 0.560647 |
Target: 5'- gGCCUGGcgcucgugccCGCGGUCGCCGgggaacaggGCGUc -3' miRNA: 3'- gCGGACCa---------GUGCUAGCGGCaa-------UGCGu -5' |
|||||||
12997 | 5' | -55.6 | NC_003387.1 | + | 26121 | 0.68 | 0.549907 |
Target: 5'- gCGCCaGGUCggcGCGuccGUCGCCGcucGCGCGg -3' miRNA: 3'- -GCGGaCCAG---UGC---UAGCGGCaa-UGCGU- -5' |
|||||||
12997 | 5' | -55.6 | NC_003387.1 | + | 37790 | 0.68 | 0.549907 |
Target: 5'- gCGCCUGGgcgcagcaccCGCGGUCGCagcaGCGCGc -3' miRNA: 3'- -GCGGACCa---------GUGCUAGCGgcaaUGCGU- -5' |
|||||||
12997 | 5' | -55.6 | NC_003387.1 | + | 31001 | 0.68 | 0.549907 |
Target: 5'- gGCCgaGGUCAgGAUCggGCCGagcgUGCGCc -3' miRNA: 3'- gCGGa-CCAGUgCUAG--CGGCa---AUGCGu -5' |
|||||||
12997 | 5' | -55.6 | NC_003387.1 | + | 3988 | 0.68 | 0.549907 |
Target: 5'- cCGCg-GGUCAUGGacUCGUCGcgGCGCAc -3' miRNA: 3'- -GCGgaCCAGUGCU--AGCGGCaaUGCGU- -5' |
|||||||
12997 | 5' | -55.6 | NC_003387.1 | + | 45108 | 0.68 | 0.549907 |
Target: 5'- gCGCaucGGUCACuuGGUCGCCGU-GCGUc -3' miRNA: 3'- -GCGga-CCAGUG--CUAGCGGCAaUGCGu -5' |
|||||||
12997 | 5' | -55.6 | NC_003387.1 | + | 43952 | 0.69 | 0.539231 |
Target: 5'- gGUCUGGUCGuCGAUCuugaCgGUUACGCc -3' miRNA: 3'- gCGGACCAGU-GCUAGc---GgCAAUGCGu -5' |
|||||||
12997 | 5' | -55.6 | NC_003387.1 | + | 23082 | 0.69 | 0.5181 |
Target: 5'- aGCC-GGUUACucgCGCCGUcGCGCGu -3' miRNA: 3'- gCGGaCCAGUGcuaGCGGCAaUGCGU- -5' |
|||||||
12997 | 5' | -55.6 | NC_003387.1 | + | 48424 | 0.69 | 0.507658 |
Target: 5'- uGCCgGGUCGCGGUgCGCUGcu-CGCc -3' miRNA: 3'- gCGGaCCAGUGCUA-GCGGCaauGCGu -5' |
|||||||
12997 | 5' | -55.6 | NC_003387.1 | + | 46382 | 0.69 | 0.507658 |
Target: 5'- gGCCUGGUCGagcuucuugcCGAUCGCCuggcCGCc -3' miRNA: 3'- gCGGACCAGU----------GCUAGCGGcaauGCGu -5' |
|||||||
12997 | 5' | -55.6 | NC_003387.1 | + | 18329 | 0.69 | 0.497307 |
Target: 5'- uCGUcgCUGGUCGCGccguuuccguuGUCGCCGUUGgGUu -3' miRNA: 3'- -GCG--GACCAGUGC-----------UAGCGGCAAUgCGu -5' |
|||||||
12997 | 5' | -55.6 | NC_003387.1 | + | 21723 | 0.69 | 0.497307 |
Target: 5'- cCGaCCUGGUCGUGGaaaucgUCGCCGagGCGCu -3' miRNA: 3'- -GC-GGACCAGUGCU------AGCGGCaaUGCGu -5' |
|||||||
12997 | 5' | -55.6 | NC_003387.1 | + | 11675 | 0.69 | 0.487051 |
Target: 5'- gGCCUcGGcgaUCGCGugggugucaauGUCGCCGUcgACGCAg -3' miRNA: 3'- gCGGA-CC---AGUGC-----------UAGCGGCAa-UGCGU- -5' |
|||||||
12997 | 5' | -55.6 | NC_003387.1 | + | 10751 | 0.69 | 0.487051 |
Target: 5'- cCGCUgacacGGcCGCGAUCGCCGgUACGa- -3' miRNA: 3'- -GCGGa----CCaGUGCUAGCGGCaAUGCgu -5' |
|||||||
12997 | 5' | -55.6 | NC_003387.1 | + | 13660 | 0.69 | 0.487051 |
Target: 5'- gGCUcGGUCGcCGAgggCGCCGUcgACGCu -3' miRNA: 3'- gCGGaCCAGU-GCUa--GCGGCAa-UGCGu -5' |
|||||||
12997 | 5' | -55.6 | NC_003387.1 | + | 25994 | 0.7 | 0.476896 |
Target: 5'- uCGCCggGGUCGCGAUCcaGCuCGcgccGCGCAc -3' miRNA: 3'- -GCGGa-CCAGUGCUAG--CG-GCaa--UGCGU- -5' |
|||||||
12997 | 5' | -55.6 | NC_003387.1 | + | 50279 | 0.7 | 0.466847 |
Target: 5'- gGCCUGGcgCGCGuccaUGCgGUUGCGCu -3' miRNA: 3'- gCGGACCa-GUGCua--GCGgCAAUGCGu -5' |
|||||||
12997 | 5' | -55.6 | NC_003387.1 | + | 7818 | 0.71 | 0.427797 |
Target: 5'- aCGCCUGG-CGgccgaGGUCGcCCGgcGCGCAg -3' miRNA: 3'- -GCGGACCaGUg----CUAGC-GGCaaUGCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home