Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12998 | 5' | -48.6 | NC_003387.1 | + | 14721 | 0.66 | 0.962178 |
Target: 5'- -uCUGgcGAGGUGuggauUCAggACGGCAuCGAGg -3' miRNA: 3'- auGACaaCUCCAU-----AGU--UGUCGU-GCUC- -5' |
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12998 | 5' | -48.6 | NC_003387.1 | + | 38163 | 0.67 | 0.933086 |
Target: 5'- gGCUcGUcGAGGUuUCAGCAGUACa-- -3' miRNA: 3'- aUGA-CAaCUCCAuAGUUGUCGUGcuc -5' |
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12998 | 5' | -48.6 | NC_003387.1 | + | 6330 | 0.67 | 0.927156 |
Target: 5'- cACUGUUGAGcUGUCAACAcgcuGCGCc-- -3' miRNA: 3'- aUGACAACUCcAUAGUUGU----CGUGcuc -5' |
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12998 | 5' | -48.6 | NC_003387.1 | + | 10436 | 0.68 | 0.892819 |
Target: 5'- gGCUGUcgGcGGGcAUCGACAGCGCGc- -3' miRNA: 3'- aUGACAa-C-UCCaUAGUUGUCGUGCuc -5' |
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12998 | 5' | -48.6 | NC_003387.1 | + | 23616 | 0.68 | 0.892819 |
Target: 5'- aGCUGUggUGGGGca-CAACGGCAucCGAGa -3' miRNA: 3'- aUGACA--ACUCCauaGUUGUCGU--GCUC- -5' |
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12998 | 5' | -48.6 | NC_003387.1 | + | 15872 | 0.68 | 0.914354 |
Target: 5'- cUGCUGcUUGAGGgcgGUC-ACAGCGCc-- -3' miRNA: 3'- -AUGAC-AACUCCa--UAGuUGUCGUGcuc -5' |
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12998 | 5' | -48.6 | NC_003387.1 | + | 2749 | 0.73 | 0.669435 |
Target: 5'- gGgUGUUGAGGUGUCAACAcaaacGCccCGAGu -3' miRNA: 3'- aUgACAACUCCAUAGUUGU-----CGu-GCUC- -5' |
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12998 | 5' | -48.6 | NC_003387.1 | + | 2160 | 0.76 | 0.485436 |
Target: 5'- -cCUGUUGAGGUGUCAACacaaAGCGCc-- -3' miRNA: 3'- auGACAACUCCAUAGUUG----UCGUGcuc -5' |
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12998 | 5' | -48.6 | NC_003387.1 | + | 29113 | 0.78 | 0.402363 |
Target: 5'- aGCUGUUGGGGUAUCAACAccccaGCGGa -3' miRNA: 3'- aUGACAACUCCAUAGUUGUcg---UGCUc -5' |
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12998 | 5' | -48.6 | NC_003387.1 | + | 29913 | 0.86 | 0.137868 |
Target: 5'- gUACUGUUGAGGcAUCAACAGCACu-- -3' miRNA: 3'- -AUGACAACUCCaUAGUUGUCGUGcuc -5' |
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12998 | 5' | -48.6 | NC_003387.1 | + | 50004 | 0.95 | 0.033617 |
Target: 5'- gUAgUGUUGAGGUAUCAACAGCACGAc -3' miRNA: 3'- -AUgACAACUCCAUAGUUGUCGUGCUc -5' |
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12998 | 5' | -48.6 | NC_003387.1 | + | 50594 | 1.09 | 0.004025 |
Target: 5'- gUACUGUUGAGGUAUCAACAGCACGAGg -3' miRNA: 3'- -AUGACAACUCCAUAGUUGUCGUGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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