miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12999 3' -64.4 NC_003387.1 + 45082 0.67 0.251245
Target:  5'- cGUCCugGGCCGGuguUCgGCGGCCaGGUCGu -3'
miRNA:   3'- -CGGG--CCGGUCu--GGgCGCCGGcCUAGU- -5'
12999 3' -64.4 NC_003387.1 + 38085 0.67 0.251245
Target:  5'- cGCCCucGGCCuuGCCCuucgcguacacGuCGGCCGGGUUg -3'
miRNA:   3'- -CGGG--CCGGucUGGG-----------C-GCCGGCCUAGu -5'
12999 3' -64.4 NC_003387.1 + 29364 0.67 0.251245
Target:  5'- aGCUCGGCCAucacuuGCUCGCGGgugagcagCGGGUCAu -3'
miRNA:   3'- -CGGGCCGGUc-----UGGGCGCCg-------GCCUAGU- -5'
12999 3' -64.4 NC_003387.1 + 30245 0.67 0.239288
Target:  5'- cGCCCGGUacGACgCCGCGGUCG--UCGa -3'
miRNA:   3'- -CGGGCCGguCUG-GGCGCCGGCcuAGU- -5'
12999 3' -64.4 NC_003387.1 + 47924 0.67 0.235795
Target:  5'- uGCCguugUGGCCgucgccgcGGGCCUGCGacaugaagucacggcGCCGGAUCGa -3'
miRNA:   3'- -CGG----GCCGG--------UCUGGGCGC---------------CGGCCUAGU- -5'
12999 3' -64.4 NC_003387.1 + 49055 0.67 0.233491
Target:  5'- gGCCuCGGUCAGG-CCGCucaGCCGGggCAc -3'
miRNA:   3'- -CGG-GCCGGUCUgGGCGc--CGGCCuaGU- -5'
12999 3' -64.4 NC_003387.1 + 5805 0.67 0.233491
Target:  5'- uGCCCGGCuCAaGCgUGCGGCCGug-CAc -3'
miRNA:   3'- -CGGGCCG-GUcUGgGCGCCGGCcuaGU- -5'
12999 3' -64.4 NC_003387.1 + 17095 0.67 0.233491
Target:  5'- cGCCCGGCCgccucggcGGGCUccuCGgGGCCGuaggcGAUCGc -3'
miRNA:   3'- -CGGGCCGG--------UCUGG---GCgCCGGC-----CUAGU- -5'
12999 3' -64.4 NC_003387.1 + 9748 0.68 0.227811
Target:  5'- aGgUCGGCCAGGCUcaCGCGcauGCCGGggCGg -3'
miRNA:   3'- -CgGGCCGGUCUGG--GCGC---CGGCCuaGU- -5'
12999 3' -64.4 NC_003387.1 + 24822 0.68 0.226131
Target:  5'- -gCCGGUCAaGGCCgcgugugcgcugucUGCGGCCGGGUg- -3'
miRNA:   3'- cgGGCCGGU-CUGG--------------GCGCCGGCCUAgu -5'
12999 3' -64.4 NC_003387.1 + 45395 0.68 0.216804
Target:  5'- cGCCCGGCC--GCCCGa-GCC-GAUCGu -3'
miRNA:   3'- -CGGGCCGGucUGGGCgcCGGcCUAGU- -5'
12999 3' -64.4 NC_003387.1 + 40121 0.68 0.21042
Target:  5'- gGCCCGGCgucgggcaaguucaAGGCCCacggcgacaccgucgGCGGCCcGAUCGu -3'
miRNA:   3'- -CGGGCCGg-------------UCUGGG---------------CGCCGGcCUAGU- -5'
12999 3' -64.4 NC_003387.1 + 8060 0.68 0.206254
Target:  5'- aGCaCCGG-CAGcCCCuCGGCCaGGAUCGc -3'
miRNA:   3'- -CG-GGCCgGUCuGGGcGCCGG-CCUAGU- -5'
12999 3' -64.4 NC_003387.1 + 13308 0.68 0.206254
Target:  5'- cGCCCGGUCAccucGACCCacucGCGcGCCaGGcgCAc -3'
miRNA:   3'- -CGGGCCGGU----CUGGG----CGC-CGG-CCuaGU- -5'
12999 3' -64.4 NC_003387.1 + 48245 0.68 0.206254
Target:  5'- cGCCCGGUCGG--CCGCGGCCa----- -3'
miRNA:   3'- -CGGGCCGGUCugGGCGCCGGccuagu -5'
12999 3' -64.4 NC_003387.1 + 17514 0.68 0.201148
Target:  5'- uGCUCGGCCAGcAUgCGCagcggcucGGCCGGuAUCc -3'
miRNA:   3'- -CGGGCCGGUC-UGgGCG--------CCGGCC-UAGu -5'
12999 3' -64.4 NC_003387.1 + 9998 0.68 0.201148
Target:  5'- aCCCGacCCGuuCCCGCGGCCGGG-CGa -3'
miRNA:   3'- cGGGCc-GGUcuGGGCGCCGGCCUaGU- -5'
12999 3' -64.4 NC_003387.1 + 14168 0.68 0.196152
Target:  5'- cGCCgGGCCGGG-CCGCGGgCGuGAgggCGu -3'
miRNA:   3'- -CGGgCCGGUCUgGGCGCCgGC-CUa--GU- -5'
12999 3' -64.4 NC_003387.1 + 13162 0.68 0.196152
Target:  5'- gGCCgucgaGGUCAGGCUCGCGuGCCauGAUCAg -3'
miRNA:   3'- -CGGg----CCGGUCUGGGCGC-CGGc-CUAGU- -5'
12999 3' -64.4 NC_003387.1 + 324 0.69 0.18934
Target:  5'- aGCCCGGCgacacgcacgccaAGAUCCGCGuGCgCGcGGUCGa -3'
miRNA:   3'- -CGGGCCGg------------UCUGGGCGC-CG-GC-CUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.