Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12999 | 5' | -60.2 | NC_003387.1 | + | 17140 | 0.67 | 0.375115 |
Target: 5'- cUCGACCggcugUCACCgGCGGCCcGCgCUGa- -3' miRNA: 3'- uAGCUGG-----AGUGG-CGCCGGcUG-GACau -5' |
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12999 | 5' | -60.2 | NC_003387.1 | + | 17225 | 0.67 | 0.366559 |
Target: 5'- cGUCGGCC-CACCaCGGCCG-CUUGc- -3' miRNA: 3'- -UAGCUGGaGUGGcGCCGGCuGGACau -5' |
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12999 | 5' | -60.2 | NC_003387.1 | + | 20466 | 0.68 | 0.309752 |
Target: 5'- uGUCGGCCUCggcgacgGCCagGCGGUCGGCCa--- -3' miRNA: 3'- -UAGCUGGAG-------UGG--CGCCGGCUGGacau -5' |
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12999 | 5' | -60.2 | NC_003387.1 | + | 21654 | 0.67 | 0.383804 |
Target: 5'- cGUCGACCgcgGCgGCGGCCGAgCa--- -3' miRNA: 3'- -UAGCUGGag-UGgCGCCGGCUgGacau -5' |
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12999 | 5' | -60.2 | NC_003387.1 | + | 24787 | 0.68 | 0.318097 |
Target: 5'- -cCGGaaccgCUCGgggUCGCGGCCGACCUGg- -3' miRNA: 3'- uaGCUg----GAGU---GGCGCCGGCUGGACau -5' |
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12999 | 5' | -60.2 | NC_003387.1 | + | 24873 | 0.67 | 0.358138 |
Target: 5'- uGUCGAUCguggCGCCGCGGCugucgaacuCGACCg--- -3' miRNA: 3'- -UAGCUGGa---GUGGCGCCG---------GCUGGacau -5' |
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12999 | 5' | -60.2 | NC_003387.1 | + | 24873 | 0.68 | 0.325829 |
Target: 5'- cUCGACCUCggGCgGUGGCUGcgcCCUGUc -3' miRNA: 3'- uAGCUGGAG--UGgCGCCGGCu--GGACAu -5' |
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12999 | 5' | -60.2 | NC_003387.1 | + | 27359 | 0.66 | 0.40158 |
Target: 5'- cUCGACCUCGCCGCucUUGGCgCUGg- -3' miRNA: 3'- uAGCUGGAGUGGCGccGGCUG-GACau -5' |
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12999 | 5' | -60.2 | NC_003387.1 | + | 30280 | 0.68 | 0.333699 |
Target: 5'- --aGGCCaaCGCCGCGGCCcgcGCCUGg- -3' miRNA: 3'- uagCUGGa-GUGGCGCCGGc--UGGACau -5' |
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12999 | 5' | -60.2 | NC_003387.1 | + | 30554 | 0.66 | 0.40158 |
Target: 5'- cAUgGACCgcCGCCGCGGCCGguacgcGCC-GUGc -3' miRNA: 3'- -UAgCUGGa-GUGGCGCCGGC------UGGaCAU- -5' |
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12999 | 5' | -60.2 | NC_003387.1 | + | 31070 | 0.72 | 0.177112 |
Target: 5'- cUCGGCCgcCGCCGCGGUCGACgagCUGa- -3' miRNA: 3'- uAGCUGGa-GUGGCGCCGGCUG---GACau -5' |
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12999 | 5' | -60.2 | NC_003387.1 | + | 31138 | 0.74 | 0.117959 |
Target: 5'- cGUCGGCCUCGCUGauGCCGcgcGCCUGg- -3' miRNA: 3'- -UAGCUGGAGUGGCgcCGGC---UGGACau -5' |
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12999 | 5' | -60.2 | NC_003387.1 | + | 32783 | 0.72 | 0.181876 |
Target: 5'- -cCGGCCgcgUACCGCcgGGUCGACCUGg- -3' miRNA: 3'- uaGCUGGa--GUGGCG--CCGGCUGGACau -5' |
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12999 | 5' | -60.2 | NC_003387.1 | + | 34700 | 0.67 | 0.375115 |
Target: 5'- cGUgGGCCUggUACaUGCGGCgCGACCUGg- -3' miRNA: 3'- -UAgCUGGA--GUG-GCGCCG-GCUGGACau -5' |
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12999 | 5' | -60.2 | NC_003387.1 | + | 35660 | 0.66 | 0.429202 |
Target: 5'- -cCGACCUCgACCGCGGgCGGuggCUGa- -3' miRNA: 3'- uaGCUGGAG-UGGCGCCgGCUg--GACau -5' |
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12999 | 5' | -60.2 | NC_003387.1 | + | 37090 | 0.7 | 0.23602 |
Target: 5'- gGUCGACCUCGCCGUGcGCgcccuCGACgUGc- -3' miRNA: 3'- -UAGCUGGAGUGGCGC-CG-----GCUGgACau -5' |
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12999 | 5' | -60.2 | NC_003387.1 | + | 38403 | 0.67 | 0.357304 |
Target: 5'- cUCGACCUCgacaACCaccccgaGCGGCUGGCgCUGg- -3' miRNA: 3'- uAGCUGGAG----UGG-------CGCCGGCUG-GACau -5' |
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12999 | 5' | -60.2 | NC_003387.1 | + | 39524 | 0.66 | 0.429202 |
Target: 5'- cGUUGACCUUGCCGCGcuucucgaucgcGUCGGCCa--- -3' miRNA: 3'- -UAGCUGGAGUGGCGC------------CGGCUGGacau -5' |
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12999 | 5' | -60.2 | NC_003387.1 | + | 41629 | 0.67 | 0.383804 |
Target: 5'- -aCGACCgcgcccaagcuaaggCGCUGCGGUacgucgacgacugCGACCUGUGg -3' miRNA: 3'- uaGCUGGa--------------GUGGCGCCG-------------GCUGGACAU- -5' |
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12999 | 5' | -60.2 | NC_003387.1 | + | 41741 | 0.67 | 0.383804 |
Target: 5'- --gGACgUCACC-CGGCUGGCCgcgGUGu -3' miRNA: 3'- uagCUGgAGUGGcGCCGGCUGGa--CAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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