miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12999 5' -60.2 NC_003387.1 + 5152 0.67 0.375115
Target:  5'- gGUCGAgCUUCACCgacacgcgaguGCGGCCGACgaGc- -3'
miRNA:   3'- -UAGCU-GGAGUGG-----------CGCCGGCUGgaCau -5'
12999 5' -60.2 NC_003387.1 + 10972 0.67 0.375115
Target:  5'- gGUCGcACa-CACCGCGGCCaGCCggGUGa -3'
miRNA:   3'- -UAGC-UGgaGUGGCGCCGGcUGGa-CAU- -5'
12999 5' -60.2 NC_003387.1 + 17225 0.67 0.366559
Target:  5'- cGUCGGCC-CACCaCGGCCG-CUUGc- -3'
miRNA:   3'- -UAGCUGGaGUGGcGCCGGCuGGACau -5'
12999 5' -60.2 NC_003387.1 + 24873 0.67 0.358138
Target:  5'- uGUCGAUCguggCGCCGCGGCugucgaacuCGACCg--- -3'
miRNA:   3'- -UAGCUGGa---GUGGCGCCG---------GCUGGacau -5'
12999 5' -60.2 NC_003387.1 + 6930 0.67 0.358138
Target:  5'- uGUCGGCCaUCAUCGCGGCCuGCg---- -3'
miRNA:   3'- -UAGCUGG-AGUGGCGCCGGcUGgacau -5'
12999 5' -60.2 NC_003387.1 + 45205 0.67 0.358138
Target:  5'- -cCGGCCcguUCGacCCGCGGCCGAUC-GUGg -3'
miRNA:   3'- uaGCUGG---AGU--GGCGCCGGCUGGaCAU- -5'
12999 5' -60.2 NC_003387.1 + 42055 0.67 0.358138
Target:  5'- gAUCGACCgCGgCGUGuaCGACCUGg- -3'
miRNA:   3'- -UAGCUGGaGUgGCGCcgGCUGGACau -5'
12999 5' -60.2 NC_003387.1 + 38403 0.67 0.357304
Target:  5'- cUCGACCUCgacaACCaccccgaGCGGCUGGCgCUGg- -3'
miRNA:   3'- uAGCUGGAG----UGG-------CGCCGGCUG-GACau -5'
12999 5' -60.2 NC_003387.1 + 10875 0.67 0.349854
Target:  5'- -aCGACCgccgucgGCCGCuGGCCGACCa--- -3'
miRNA:   3'- uaGCUGGag-----UGGCG-CCGGCUGGacau -5'
12999 5' -60.2 NC_003387.1 + 51036 0.67 0.349854
Target:  5'- aGUCGACCgcCGCCGCGGugucgguaCCGGCCc--- -3'
miRNA:   3'- -UAGCUGGa-GUGGCGCC--------GGCUGGacau -5'
12999 5' -60.2 NC_003387.1 + 8646 0.67 0.341708
Target:  5'- cGUCuGACCUCgaaACCGuuGgCGGCCUGUGg -3'
miRNA:   3'- -UAG-CUGGAG---UGGCgcCgGCUGGACAU- -5'
12999 5' -60.2 NC_003387.1 + 30280 0.68 0.333699
Target:  5'- --aGGCCaaCGCCGCGGCCcgcGCCUGg- -3'
miRNA:   3'- uagCUGGa-GUGGCGCCGGc--UGGACau -5'
12999 5' -60.2 NC_003387.1 + 24873 0.68 0.325829
Target:  5'- cUCGACCUCggGCgGUGGCUGcgcCCUGUc -3'
miRNA:   3'- uAGCUGGAG--UGgCGCCGGCu--GGACAu -5'
12999 5' -60.2 NC_003387.1 + 2382 0.68 0.318097
Target:  5'- gGUC-ACgUUGCCGCGGgCGGCCUGa- -3'
miRNA:   3'- -UAGcUGgAGUGGCGCCgGCUGGACau -5'
12999 5' -60.2 NC_003387.1 + 24787 0.68 0.318097
Target:  5'- -cCGGaaccgCUCGgggUCGCGGCCGACCUGg- -3'
miRNA:   3'- uaGCUg----GAGU---GGCGCCGGCUGGACau -5'
12999 5' -60.2 NC_003387.1 + 20466 0.68 0.309752
Target:  5'- uGUCGGCCUCggcgacgGCCagGCGGUCGGCCa--- -3'
miRNA:   3'- -UAGCUGGAG-------UGG--CGCCGGCUGGacau -5'
12999 5' -60.2 NC_003387.1 + 7608 0.68 0.295734
Target:  5'- cGUC-ACCUCguacACCGCGGCgucgaCGACCUGg- -3'
miRNA:   3'- -UAGcUGGAG----UGGCGCCG-----GCUGGACau -5'
12999 5' -60.2 NC_003387.1 + 4473 0.68 0.295734
Target:  5'- -cCGAgcugCUgGCCGCGGCCGACCgGg- -3'
miRNA:   3'- uaGCUg---GAgUGGCGCCGGCUGGaCau -5'
12999 5' -60.2 NC_003387.1 + 10660 0.69 0.261215
Target:  5'- uUCGGCCUCGaCGCGGCugCGACCa--- -3'
miRNA:   3'- uAGCUGGAGUgGCGCCG--GCUGGacau -5'
12999 5' -60.2 NC_003387.1 + 45873 0.69 0.254717
Target:  5'- -gCGGCUgcgCGCCGCGGCCGAgCgGg- -3'
miRNA:   3'- uaGCUGGa--GUGGCGCCGGCUgGaCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.