Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13000 | 3' | -51.3 | NC_003387.1 | + | 45487 | 0.66 | 0.860634 |
Target: 5'- uCGAcCAUGCGuGAGUGCGCGAA-CUGc -3' miRNA: 3'- -GCUaGUACGCcUUCGUGCGUUUcGAC- -5' |
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13000 | 3' | -51.3 | NC_003387.1 | + | 39928 | 0.71 | 0.618132 |
Target: 5'- gCGGUCGuUGC-GAGGCGCGCAuuGCg- -3' miRNA: 3'- -GCUAGU-ACGcCUUCGUGCGUuuCGac -5' |
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13000 | 3' | -51.3 | NC_003387.1 | + | 22837 | 0.68 | 0.774378 |
Target: 5'- gCGAUCGccaacGCGaucGGCGCGCAAGGCg- -3' miRNA: 3'- -GCUAGUa----CGCcu-UCGUGCGUUUCGac -5' |
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13000 | 3' | -51.3 | NC_003387.1 | + | 17787 | 0.68 | 0.794969 |
Target: 5'- aCGAUCcccAUGuCGGAGcGCACGCccgAGAGCa- -3' miRNA: 3'- -GCUAG---UAC-GCCUU-CGUGCG---UUUCGac -5' |
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13000 | 3' | -51.3 | NC_003387.1 | + | 3954 | 0.68 | 0.804995 |
Target: 5'- aCGAcCcgGUGGucGCGCuGCAAGGCUc -3' miRNA: 3'- -GCUaGuaCGCCuuCGUG-CGUUUCGAc -5' |
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13000 | 3' | -51.3 | NC_003387.1 | + | 48973 | 0.67 | 0.813851 |
Target: 5'- gCGAUCGUGCacgcGGGCAUGCGGccgucgaucgcguGGCUGu -3' miRNA: 3'- -GCUAGUACGcc--UUCGUGCGUU-------------UCGAC- -5' |
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13000 | 3' | -51.3 | NC_003387.1 | + | 2964 | 0.67 | 0.824446 |
Target: 5'- uGAUCAgcggGUGGAccGGCA-GCAAGGCc- -3' miRNA: 3'- gCUAGUa---CGCCU--UCGUgCGUUUCGac -5' |
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13000 | 3' | -51.3 | NC_003387.1 | + | 42525 | 0.67 | 0.832918 |
Target: 5'- cCGAUCAcGCGGcccGCaugaccgACGCcGAGCUGg -3' miRNA: 3'- -GCUAGUaCGCCuu-CG-------UGCGuUUCGAC- -5' |
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13000 | 3' | -51.3 | NC_003387.1 | + | 22144 | 0.67 | 0.84302 |
Target: 5'- gCGAcguUCAcugGCGGcGGCACGCucAGCg- -3' miRNA: 3'- -GCU---AGUa--CGCCuUCGUGCGuuUCGac -5' |
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13000 | 3' | -51.3 | NC_003387.1 | + | 13951 | 0.72 | 0.527798 |
Target: 5'- gCGGUCAUGUcuuGGAuGCACGCGAuuucuGGCUc -3' miRNA: 3'- -GCUAGUACG---CCUuCGUGCGUU-----UCGAc -5' |
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13000 | 3' | -51.3 | NC_003387.1 | + | 43730 | 0.73 | 0.516805 |
Target: 5'- gCGG-CAUGCGGGAGCcCGCGAGcguGUUGg -3' miRNA: 3'- -GCUaGUACGCCUUCGuGCGUUU---CGAC- -5' |
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13000 | 3' | -51.3 | NC_003387.1 | + | 42375 | 0.73 | 0.516805 |
Target: 5'- gGAUCAUGUGcGGGCuGCGCAAcGGCUGc -3' miRNA: 3'- gCUAGUACGCcUUCG-UGCGUU-UCGAC- -5' |
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13000 | 3' | -51.3 | NC_003387.1 | + | 33188 | 0.66 | 0.877215 |
Target: 5'- cCGccgCAUGCGGAucgcgcAGCgcaaGCGCGAGGCc- -3' miRNA: 3'- -GCua-GUACGCCU------UCG----UGCGUUUCGac -5' |
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13000 | 3' | -51.3 | NC_003387.1 | + | 41129 | 0.66 | 0.877215 |
Target: 5'- gGAUCAaGUGGcAGCGCGCcGAcggccGCUGc -3' miRNA: 3'- gCUAGUaCGCCuUCGUGCGuUU-----CGAC- -5' |
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13000 | 3' | -51.3 | NC_003387.1 | + | 22079 | 0.66 | 0.877215 |
Target: 5'- gCGA-CG-GCGGuAGCGCGUggGGCa- -3' miRNA: 3'- -GCUaGUaCGCCuUCGUGCGuuUCGac -5' |
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13000 | 3' | -51.3 | NC_003387.1 | + | 50924 | 1.1 | 0.001781 |
Target: 5'- aCGAUCAUGCGGAAGCACGCAAAGCUGa -3' miRNA: 3'- -GCUAGUACGCCUUCGUGCGUUUCGAC- -5' |
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13000 | 3' | -51.3 | NC_003387.1 | + | 27042 | 0.73 | 0.495107 |
Target: 5'- gCGAggcgGCGGAAGCAUGUcggcuGAGCUGa -3' miRNA: 3'- -GCUaguaCGCCUUCGUGCGu----UUCGAC- -5' |
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13000 | 3' | -51.3 | NC_003387.1 | + | 30684 | 0.67 | 0.84302 |
Target: 5'- cCGGUCGcaccgGCGGggGCGuuuucgugcgccUGCGGGGCg- -3' miRNA: 3'- -GCUAGUa----CGCCuuCGU------------GCGUUUCGac -5' |
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13000 | 3' | -51.3 | NC_003387.1 | + | 8915 | 0.69 | 0.720337 |
Target: 5'- cCGAUCGUGCagcacucgucgaGGAAGCGgGCGAcGCc- -3' miRNA: 3'- -GCUAGUACG------------CCUUCGUgCGUUuCGac -5' |
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13000 | 3' | -51.3 | NC_003387.1 | + | 41868 | 0.71 | 0.595271 |
Target: 5'- aGAUCGgcagaccGCGGucggcGAGCugGCGAAGCUc -3' miRNA: 3'- gCUAGUa------CGCC-----UUCGugCGUUUCGAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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