Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13000 | 3' | -51.3 | NC_003387.1 | + | 45487 | 0.66 | 0.860634 |
Target: 5'- uCGAcCAUGCGuGAGUGCGCGAA-CUGc -3' miRNA: 3'- -GCUaGUACGCcUUCGUGCGUUUcGAC- -5' |
|||||||
13000 | 3' | -51.3 | NC_003387.1 | + | 52489 | 0.66 | 0.869058 |
Target: 5'- uGAgCAUGuCGGggGCGCGCAu-GUc- -3' miRNA: 3'- gCUaGUAC-GCCuuCGUGCGUuuCGac -5' |
|||||||
13000 | 3' | -51.3 | NC_003387.1 | + | 33188 | 0.66 | 0.877215 |
Target: 5'- cCGccgCAUGCGGAucgcgcAGCgcaaGCGCGAGGCc- -3' miRNA: 3'- -GCua-GUACGCCU------UCG----UGCGUUUCGac -5' |
|||||||
13000 | 3' | -51.3 | NC_003387.1 | + | 41129 | 0.66 | 0.877215 |
Target: 5'- gGAUCAaGUGGcAGCGCGCcGAcggccGCUGc -3' miRNA: 3'- gCUAGUaCGCCuUCGUGCGuUU-----CGAC- -5' |
|||||||
13000 | 3' | -51.3 | NC_003387.1 | + | 22079 | 0.66 | 0.877215 |
Target: 5'- gCGA-CG-GCGGuAGCGCGUggGGCa- -3' miRNA: 3'- -GCUaGUaCGCCuUCGUGCGuuUCGac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home