Results 21 - 40 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13000 | 5' | -63.2 | NC_003387.1 | + | 27270 | 0.66 | 0.320262 |
Target: 5'- uGCCuggucGCGCGAggagaacgccgcacuGGCGgCCCUugaGAGCCGc -3' miRNA: 3'- -CGGu----CGCGCU---------------UCGCgGGGG---CUCGGCu -5' |
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13000 | 5' | -63.2 | NC_003387.1 | + | 12706 | 0.66 | 0.317286 |
Target: 5'- uCCcGCGCG-AGCGCCCgCgGGGCUc- -3' miRNA: 3'- cGGuCGCGCuUCGCGGG-GgCUCGGcu -5' |
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13000 | 5' | -63.2 | NC_003387.1 | + | 33546 | 0.66 | 0.317286 |
Target: 5'- uGCCGuuagcgaccGUGCGGGccGCGCCCUCGAcagcGUCGAc -3' miRNA: 3'- -CGGU---------CGCGCUU--CGCGGGGGCU----CGGCU- -5' |
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13000 | 5' | -63.2 | NC_003387.1 | + | 2459 | 0.66 | 0.317286 |
Target: 5'- cGCCAgGC-CGAGGUGCaccgCCCGGcGCUGAc -3' miRNA: 3'- -CGGU-CGcGCUUCGCGg---GGGCU-CGGCU- -5' |
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13000 | 5' | -63.2 | NC_003387.1 | + | 44182 | 0.66 | 0.309935 |
Target: 5'- uGCCcGCGCG-GGCaacuaacuaCCCgCGAGCCGGu -3' miRNA: 3'- -CGGuCGCGCuUCGc--------GGGgGCUCGGCU- -5' |
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13000 | 5' | -63.2 | NC_003387.1 | + | 44620 | 0.66 | 0.309935 |
Target: 5'- gGCCguGGCGCG-AGCGUguggCCCUG-GCCGc -3' miRNA: 3'- -CGG--UCGCGCuUCGCG----GGGGCuCGGCu -5' |
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13000 | 5' | -63.2 | NC_003387.1 | + | 16985 | 0.66 | 0.309935 |
Target: 5'- cGCgGGCGgGcuGCGUcaucgaCCCCGAGCgGGc -3' miRNA: 3'- -CGgUCGCgCuuCGCG------GGGGCUCGgCU- -5' |
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13000 | 5' | -63.2 | NC_003387.1 | + | 44895 | 0.66 | 0.302716 |
Target: 5'- cGCCuGCGCGccGgGCaCCUCG-GCCGc -3' miRNA: 3'- -CGGuCGCGCuuCgCG-GGGGCuCGGCu -5' |
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13000 | 5' | -63.2 | NC_003387.1 | + | 18693 | 0.66 | 0.302716 |
Target: 5'- aCCGGgGUGggGCGCCgugCCGAGgCa- -3' miRNA: 3'- cGGUCgCGCuuCGCGGg--GGCUCgGcu -5' |
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13000 | 5' | -63.2 | NC_003387.1 | + | 34980 | 0.66 | 0.302716 |
Target: 5'- -gCGGUGUGGccccuGGCgGCCCggCCGGGCCGGg -3' miRNA: 3'- cgGUCGCGCU-----UCG-CGGG--GGCUCGGCU- -5' |
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13000 | 5' | -63.2 | NC_003387.1 | + | 41376 | 0.66 | 0.302716 |
Target: 5'- cGCCgAGCGUGAggccgAGCGCCgggcgaCCGAGgCGc -3' miRNA: 3'- -CGG-UCGCGCU-----UCGCGGg-----GGCUCgGCu -5' |
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13000 | 5' | -63.2 | NC_003387.1 | + | 21468 | 0.66 | 0.302716 |
Target: 5'- cGCUGGCGCagcccGCGCCggUCGGGCCGGg -3' miRNA: 3'- -CGGUCGCGcuu--CGCGGg-GGCUCGGCU- -5' |
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13000 | 5' | -63.2 | NC_003387.1 | + | 25929 | 0.67 | 0.298446 |
Target: 5'- aCCAGCGCGGccucgucgagcGGUGCUggcgcugcucgcuaaCCCGuucGCCGAg -3' miRNA: 3'- cGGUCGCGCU-----------UCGCGG---------------GGGCu--CGGCU- -5' |
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13000 | 5' | -63.2 | NC_003387.1 | + | 51301 | 0.67 | 0.295626 |
Target: 5'- uGCCAGCucgucgGCGGcGGCGCCUcgcacaacuUCGAGCgCGAc -3' miRNA: 3'- -CGGUCG------CGCU-UCGCGGG---------GGCUCG-GCU- -5' |
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13000 | 5' | -63.2 | NC_003387.1 | + | 19859 | 0.67 | 0.295626 |
Target: 5'- cGCCgacgcGGCGCuGGGCGCCCugcaagacaCCGuGCUGGg -3' miRNA: 3'- -CGG-----UCGCGcUUCGCGGG---------GGCuCGGCU- -5' |
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13000 | 5' | -63.2 | NC_003387.1 | + | 35156 | 0.67 | 0.295626 |
Target: 5'- aCCAGCGgGGcguuGuCGCCCUugucacccuuCGGGCCGAu -3' miRNA: 3'- cGGUCGCgCUu---C-GCGGGG----------GCUCGGCU- -5' |
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13000 | 5' | -63.2 | NC_003387.1 | + | 45901 | 0.67 | 0.295626 |
Target: 5'- cCCAGCacuagGCGAAcCGCgCCuuGAGCCGc -3' miRNA: 3'- cGGUCG-----CGCUUcGCG-GGggCUCGGCu -5' |
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13000 | 5' | -63.2 | NC_003387.1 | + | 48893 | 0.67 | 0.295626 |
Target: 5'- gGCCAcCGCGAAauCGCCUgCGAGCUGc -3' miRNA: 3'- -CGGUcGCGCUUc-GCGGGgGCUCGGCu -5' |
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13000 | 5' | -63.2 | NC_003387.1 | + | 33029 | 0.67 | 0.295626 |
Target: 5'- aCgAGCuGCGAGGCGUCgaaCGAGCCGu -3' miRNA: 3'- cGgUCG-CGCUUCGCGGgg-GCUCGGCu -5' |
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13000 | 5' | -63.2 | NC_003387.1 | + | 50446 | 0.67 | 0.294924 |
Target: 5'- cGCUGGCGCccucgggcaccucGggGCGCCCaCGcAGCCc- -3' miRNA: 3'- -CGGUCGCG-------------CuuCGCGGGgGC-UCGGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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