miRNA display CGI


Results 41 - 60 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 43832 0.66 0.609883
Target:  5'- cGCCgAAAAUGGCgGCGUucACCuCGgGCGa -3'
miRNA:   3'- -CGGgUUUUGUCG-CGCGu-UGG-GCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 12735 0.66 0.614253
Target:  5'- uGCCgucgUAGAACugcggguaaucgucGUGCGCGACCuCGCGCu -3'
miRNA:   3'- -CGG----GUUUUGu-------------CGCGCGUUGG-GCGCGc -5'
13001 5' -56.7 NC_003387.1 + 38214 0.66 0.619719
Target:  5'- uGCCCGucgggucgaucGACAGCGCGCccuuaguGGCCuCGC-CGa -3'
miRNA:   3'- -CGGGUu----------UUGUCGCGCG-------UUGG-GCGcGC- -5'
13001 5' -56.7 NC_003387.1 + 13941 0.66 0.608791
Target:  5'- cGCCgAGGcuguACAGCGUGUGAuugccgcCCCGCGgGc -3'
miRNA:   3'- -CGGgUUU----UGUCGCGCGUU-------GGGCGCgC- -5'
13001 5' -56.7 NC_003387.1 + 43143 0.66 0.620813
Target:  5'- cGCUCAAggucgGACAgGUGCGCGugCUG-GCGa -3'
miRNA:   3'- -CGGGUU-----UUGU-CGCGCGUugGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 11022 0.66 0.620813
Target:  5'- cGCCUucguCGGCGcCGCGACgCCGgGuCGg -3'
miRNA:   3'- -CGGGuuuuGUCGC-GCGUUG-GGCgC-GC- -5'
13001 5' -56.7 NC_003387.1 + 18465 0.66 0.620813
Target:  5'- cGCCCGAcuCGGCGauCAGCCggucgaGCGCc -3'
miRNA:   3'- -CGGGUUuuGUCGCgcGUUGGg-----CGCGc -5'
13001 5' -56.7 NC_003387.1 + 8016 0.67 0.545003
Target:  5'- uGCCCucuguCGGCcCGCugguGgCCGCGCGa -3'
miRNA:   3'- -CGGGuuuu-GUCGcGCGu---UgGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 39158 0.67 0.534382
Target:  5'- cGCCgAGGGCguguacuggucGGUGCGCGACauuCGCGUGc -3'
miRNA:   3'- -CGGgUUUUG-----------UCGCGCGUUGg--GCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 34505 0.67 0.534382
Target:  5'- cGCCCGccgcuGCGGCGcCGCGAUCCuCGgGc -3'
miRNA:   3'- -CGGGUuu---UGUCGC-GCGUUGGGcGCgC- -5'
13001 5' -56.7 NC_003387.1 + 38450 0.67 0.534382
Target:  5'- gGCCCAcGACuGCGUGUucuGCCCGUu-- -3'
miRNA:   3'- -CGGGUuUUGuCGCGCGu--UGGGCGcgc -5'
13001 5' -56.7 NC_003387.1 + 28369 0.67 0.534382
Target:  5'- uGUCgCAGGGCGG-GCGCAACUCGUGg- -3'
miRNA:   3'- -CGG-GUUUUGUCgCGCGUUGGGCGCgc -5'
13001 5' -56.7 NC_003387.1 + 46093 0.67 0.545003
Target:  5'- aGCCCAAGACGGC-CGCcGACauguuccggCUGCuGCGg -3'
miRNA:   3'- -CGGGUUUUGUCGcGCG-UUG---------GGCG-CGC- -5'
13001 5' -56.7 NC_003387.1 + 4762 0.67 0.534382
Target:  5'- cGCCCAGcucGCGGUGCuucGCGGCCCacacgGCGUc -3'
miRNA:   3'- -CGGGUUu--UGUCGCG---CGUUGGG-----CGCGc -5'
13001 5' -56.7 NC_003387.1 + 49194 0.67 0.534382
Target:  5'- cGCCUggGGCGGCG-GCGggggcACUgGCGCc -3'
miRNA:   3'- -CGGGuuUUGUCGCgCGU-----UGGgCGCGc -5'
13001 5' -56.7 NC_003387.1 + 3425 0.67 0.545003
Target:  5'- uGCCCu---CGGCGUGCucggcgagcACCUGgGCGa -3'
miRNA:   3'- -CGGGuuuuGUCGCGCGu--------UGGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 35690 0.67 0.545003
Target:  5'- cGCCCGGcGAgGGCG-GCAGCCgC-CGCGg -3'
miRNA:   3'- -CGGGUU-UUgUCGCgCGUUGG-GcGCGC- -5'
13001 5' -56.7 NC_003387.1 + 40340 0.67 0.545003
Target:  5'- cGCCUgcAGCAGCGgcagauUGCGGgCCGuCGCGg -3'
miRNA:   3'- -CGGGuuUUGUCGC------GCGUUgGGC-GCGC- -5'
13001 5' -56.7 NC_003387.1 + 18412 0.67 0.55462
Target:  5'- gGCCgcGGGCAGCGCgggcugcucggGCAGCCacguguaCGCGCGc -3'
miRNA:   3'- -CGGguUUUGUCGCG-----------CGUUGG-------GCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 6289 0.67 0.592438
Target:  5'- uCCCGAGuguugauuggucaacAcCGGCGaCGUuACCCGCGCa -3'
miRNA:   3'- cGGGUUU---------------U-GUCGC-GCGuUGGGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.