miRNA display CGI


Results 81 - 100 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 18565 0.67 0.588089
Target:  5'- uGCCCAcAGguGCGgGuCGACCCagGCGUc -3'
miRNA:   3'- -CGGGUuUUguCGCgC-GUUGGG--CGCGc -5'
13001 5' -56.7 NC_003387.1 + 35823 0.67 0.588089
Target:  5'- gGCCgGGuacuGCAGCGCGUcggcuAugUCGUGCa -3'
miRNA:   3'- -CGGgUUu---UGUCGCGCG-----UugGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 10729 0.67 0.588089
Target:  5'- gGCCCcaccgcuuGAGCAcCGCgGCGGCCucCGCGCGc -3'
miRNA:   3'- -CGGGu-------UUUGUcGCG-CGUUGG--GCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 23839 0.67 0.555692
Target:  5'- cGCgCCGGGACucGGCGC-CGugCCGCucGCGg -3'
miRNA:   3'- -CG-GGUUUUG--UCGCGcGUugGGCG--CGC- -5'
13001 5' -56.7 NC_003387.1 + 41017 0.67 0.555692
Target:  5'- cGCCCAAaucgcGACAGCGaGCccGACgaCCGCgGCGa -3'
miRNA:   3'- -CGGGUU-----UUGUCGCgCG--UUG--GGCG-CGC- -5'
13001 5' -56.7 NC_003387.1 + 41126 0.67 0.55462
Target:  5'- -aCCGGAucaagugGCAGCGCGcCGACggCCGCuGCGa -3'
miRNA:   3'- cgGGUUU-------UGUCGCGC-GUUG--GGCG-CGC- -5'
13001 5' -56.7 NC_003387.1 + 45403 0.67 0.549271
Target:  5'- cGCCCGAgccgaucguGACGGUuuacgacaaggacauGCGCAagcucgccggGCCUGCGCc -3'
miRNA:   3'- -CGGGUU---------UUGUCG---------------CGCGU----------UGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 49257 0.67 0.566441
Target:  5'- cGCCgGGGugA-CGCGCAucgaCCGCGUGa -3'
miRNA:   3'- -CGGgUUUugUcGCGCGUug--GGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 20143 0.67 0.533324
Target:  5'- cGUCaggauGAGCAGCGCG-AACCCgagggcgucgaggGCGCGg -3'
miRNA:   3'- -CGGgu---UUUGUCGCGCgUUGGG-------------CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 4762 0.67 0.534382
Target:  5'- cGCCCAGcucGCGGUGCuucGCGGCCCacacgGCGUc -3'
miRNA:   3'- -CGGGUUu--UGUCGCG---CGUUGGG-----CGCGc -5'
13001 5' -56.7 NC_003387.1 + 49194 0.67 0.534382
Target:  5'- cGCCUggGGCGGCG-GCGggggcACUgGCGCc -3'
miRNA:   3'- -CGGGuuUUGUCGCgCGU-----UGGgCGCGc -5'
13001 5' -56.7 NC_003387.1 + 18412 0.67 0.55462
Target:  5'- gGCCgcGGGCAGCGCgggcugcucggGCAGCCacguguaCGCGCGc -3'
miRNA:   3'- -CGGguUUUGUCGCG-----------CGUUGG-------GCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 40340 0.67 0.545003
Target:  5'- cGCCUgcAGCAGCGgcagauUGCGGgCCGuCGCGg -3'
miRNA:   3'- -CGGGuuUUGUCGC------GCGUUgGGC-GCGC- -5'
13001 5' -56.7 NC_003387.1 + 6289 0.67 0.592438
Target:  5'- uCCCGAGuguugauuggucaacAcCGGCGaCGUuACCCGCGCa -3'
miRNA:   3'- cGGGUUU---------------U-GUCGC-GCGuUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 35690 0.67 0.545003
Target:  5'- cGCCCGGcGAgGGCG-GCAGCCgC-CGCGg -3'
miRNA:   3'- -CGGGUU-UUgUCGCgCGUUGG-GcGCGC- -5'
13001 5' -56.7 NC_003387.1 + 3425 0.67 0.545003
Target:  5'- uGCCCu---CGGCGUGCucggcgagcACCUGgGCGa -3'
miRNA:   3'- -CGGGuuuuGUCGCGCGu--------UGGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 36290 0.68 0.502988
Target:  5'- gGUCCAGAACgcauGGCGCGCAACggauCUGUgaacGCGa -3'
miRNA:   3'- -CGGGUUUUG----UCGCGCGUUG----GGCG----CGC- -5'
13001 5' -56.7 NC_003387.1 + 18095 0.68 0.502988
Target:  5'- uGCCCGAGGCuGCGCagguagGCGGCCaUGC-CGg -3'
miRNA:   3'- -CGGGUUUUGuCGCG------CGUUGG-GCGcGC- -5'
13001 5' -56.7 NC_003387.1 + 44351 0.68 0.4927
Target:  5'- cGUCCAGAACAccGCGgccUGCAugCCGaacaGCGg -3'
miRNA:   3'- -CGGGUUUUGU--CGC---GCGUugGGCg---CGC- -5'
13001 5' -56.7 NC_003387.1 + 34167 0.68 0.4927
Target:  5'- cGCCCucGGCcuuGCGCucgaaCGACUCGCGCa -3'
miRNA:   3'- -CGGGuuUUGu--CGCGc----GUUGGGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.