Results 101 - 120 of 251 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13001 | 5' | -56.7 | NC_003387.1 | + | 3805 | 0.68 | 0.502988 |
Target: 5'- cGCCggCAAAAguGCcaacGCGCAGCUCGCagGCGa -3' miRNA: 3'- -CGG--GUUUUguCG----CGCGUUGGGCG--CGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 44351 | 0.68 | 0.4927 |
Target: 5'- cGUCCAGAACAccGCGgccUGCAugCCGaacaGCGg -3' miRNA: 3'- -CGGGUUUUGU--CGC---GCGUugGGCg---CGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 34167 | 0.68 | 0.4927 |
Target: 5'- cGCCCucGGCcuuGCGCucgaaCGACUCGCGCa -3' miRNA: 3'- -CGGGuuUUGu--CGCGc----GUUGGGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 8286 | 0.68 | 0.523834 |
Target: 5'- cGCCCGAG--GGCGaCGUGuggaucACCgGCGCGg -3' miRNA: 3'- -CGGGUUUugUCGC-GCGU------UGGgCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 30606 | 0.68 | 0.523834 |
Target: 5'- gGCCaCAucACGaCGCacgGCAACCUGCGCa -3' miRNA: 3'- -CGG-GUuuUGUcGCG---CGUUGGGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 22465 | 0.68 | 0.523834 |
Target: 5'- uGCCCGAcccCGGCGC-CGACCC-CGaCGa -3' miRNA: 3'- -CGGGUUuu-GUCGCGcGUUGGGcGC-GC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 18909 | 0.68 | 0.513367 |
Target: 5'- cGCCgucGGCGGCGCGCucGACCCuaCGCa -3' miRNA: 3'- -CGGguuUUGUCGCGCG--UUGGGc-GCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 31027 | 0.68 | 0.513367 |
Target: 5'- uGCgCCGGGGCGGCGgccaGCAcggcACCgGCGCc -3' miRNA: 3'- -CG-GGUUUUGUCGCg---CGU----UGGgCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 48875 | 0.68 | 0.502988 |
Target: 5'- aGCCgGAucguCGGCGcCGCcuaCCGCGCGc -3' miRNA: 3'- -CGGgUUuu--GUCGC-GCGuugGGCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 27270 | 0.68 | 0.502988 |
Target: 5'- aGCCgCGAcgcgGGCAGCGCGC--CCUGCGa- -3' miRNA: 3'- -CGG-GUU----UUGUCGCGCGuuGGGCGCgc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 47881 | 0.68 | 0.513367 |
Target: 5'- cGCCaucu-CGGCGUGCAcgucGCCacaaGCGCGu -3' miRNA: 3'- -CGGguuuuGUCGCGCGU----UGGg---CGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 8088 | 0.68 | 0.48251 |
Target: 5'- uGCCgGu--CGGCGC-CAACCCGCcCGa -3' miRNA: 3'- -CGGgUuuuGUCGCGcGUUGGGCGcGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 20528 | 0.68 | 0.513367 |
Target: 5'- cGCUCGucgguGACGaCGCGCAGCUCG-GCGg -3' miRNA: 3'- -CGGGUu----UUGUcGCGCGUUGGGCgCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 24456 | 0.68 | 0.4927 |
Target: 5'- aGCCgAcGAGCAGCGCGaggugcugAACCUGCuGCGc -3' miRNA: 3'- -CGGgU-UUUGUCGCGCg-------UUGGGCG-CGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 658 | 0.68 | 0.4927 |
Target: 5'- cGCCCGAugaaccauucGACGGCGaCGCuuAGCgaggUCGCGCGc -3' miRNA: 3'- -CGGGUU----------UUGUCGC-GCG--UUG----GGCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 25434 | 0.68 | 0.4927 |
Target: 5'- uGCUUAucGGAUacucgcagGGCGCGCuGCCCGCGUc -3' miRNA: 3'- -CGGGU--UUUG--------UCGCGCGuUGGGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 35441 | 0.68 | 0.4927 |
Target: 5'- aCCCGgcuaaagacguuGGACgAGCGCGCAGUCCGCGa- -3' miRNA: 3'- cGGGU------------UUUG-UCGCGCGUUGGGCGCgc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 9961 | 0.68 | 0.523834 |
Target: 5'- cGCaCCGAG--GGCGCGCAuaaaAUCCGcCGCa -3' miRNA: 3'- -CG-GGUUUugUCGCGCGU----UGGGC-GCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 45758 | 0.68 | 0.513367 |
Target: 5'- gGUCCGAG--GGCGCGCuguggcgccuGCCCGcCGCu -3' miRNA: 3'- -CGGGUUUugUCGCGCGu---------UGGGC-GCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 49756 | 0.68 | 0.513367 |
Target: 5'- gGCCCcGAGCGaggcccauGCGCGUuACCUGCGg- -3' miRNA: 3'- -CGGGuUUUGU--------CGCGCGuUGGGCGCgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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