Results 121 - 140 of 251 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
13001 | 5' | -56.7 | NC_003387.1 | + | 5319 | 0.68 | 0.4927 |
Target: 5'- gGCUCGGGGCGGgGC-CGGuugcCCCGCGCu -3' miRNA: 3'- -CGGGUUUUGUCgCGcGUU----GGGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 4470 | 0.68 | 0.491677 |
Target: 5'- aGCCCGAGcugcuggccGCGGCcgaccggGCGCGACacgauCGUGCGg -3' miRNA: 3'- -CGGGUUU---------UGUCG-------CGCGUUGg----GCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 9600 | 0.68 | 0.481497 |
Target: 5'- cGCCCAccaccGCGGCGcCGCGccgucgcgcucguACCCgGCGCc -3' miRNA: 3'- -CGGGUuu---UGUCGC-GCGU-------------UGGG-CGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 52358 | 0.68 | 0.472423 |
Target: 5'- gGCgCGGAACcGCucGCGCAGaucgaCCGCGCGc -3' miRNA: 3'- -CGgGUUUUGuCG--CGCGUUg----GGCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 52030 | 0.68 | 0.472423 |
Target: 5'- gGCgCAAuGACguGGCGCGCGACCuCGCuaaGCGu -3' miRNA: 3'- -CGgGUU-UUG--UCGCGCGUUGG-GCG---CGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 8286 | 0.68 | 0.523834 |
Target: 5'- cGCCCGAG--GGCGaCGUGuggaucACCgGCGCGg -3' miRNA: 3'- -CGGGUUUugUCGC-GCGU------UGGgCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 9961 | 0.68 | 0.523834 |
Target: 5'- cGCaCCGAG--GGCGCGCAuaaaAUCCGcCGCa -3' miRNA: 3'- -CG-GGUUUugUCGCGCGU----UGGGC-GCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 30606 | 0.68 | 0.523834 |
Target: 5'- gGCCaCAucACGaCGCacgGCAACCUGCGCa -3' miRNA: 3'- -CGG-GUuuUGUcGCG---CGUUGGGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 244 | 0.68 | 0.4927 |
Target: 5'- cCCCGAcaugcuCAGCGUGCAgugcccuggcuGCgCCGCGCc -3' miRNA: 3'- cGGGUUuu----GUCGCGCGU-----------UG-GGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 8088 | 0.68 | 0.48251 |
Target: 5'- uGCCgGu--CGGCGC-CAACCCGCcCGa -3' miRNA: 3'- -CGGgUuuuGUCGCGcGUUGGGCGcGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 24456 | 0.68 | 0.4927 |
Target: 5'- aGCCgAcGAGCAGCGCGaggugcugAACCUGCuGCGc -3' miRNA: 3'- -CGGgU-UUUGUCGCGCg-------UUGGGCG-CGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 34167 | 0.68 | 0.4927 |
Target: 5'- cGCCCucGGCcuuGCGCucgaaCGACUCGCGCa -3' miRNA: 3'- -CGGGuuUUGu--CGCGc----GUUGGGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 4199 | 0.68 | 0.481497 |
Target: 5'- cGCCCGAcuacgugcAGCAGUGggaGCAggauuaccugcagGCCCGcCGCGa -3' miRNA: 3'- -CGGGUU--------UUGUCGCg--CGU-------------UGGGC-GCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 23713 | 0.68 | 0.472423 |
Target: 5'- cGCCC-AGGCGGCGaaCGACUCgGCGCa -3' miRNA: 3'- -CGGGuUUUGUCGCgcGUUGGG-CGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 11418 | 0.68 | 0.472423 |
Target: 5'- gGCCCcGAGguGCugucgucgGUGCucguGCCCGCGCu -3' miRNA: 3'- -CGGGuUUUguCG--------CGCGu---UGGGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 15671 | 0.68 | 0.4927 |
Target: 5'- uGCCCAcgcaggugauGAAuccCGGCGCGUGGCUCG-GCGa -3' miRNA: 3'- -CGGGU----------UUU---GUCGCGCGUUGGGCgCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 19733 | 0.68 | 0.523834 |
Target: 5'- gGCCCGcucGAAC-GCGgGCAcguAgUCGCGCGg -3' miRNA: 3'- -CGGGU---UUUGuCGCgCGU---UgGGCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 14430 | 0.68 | 0.523834 |
Target: 5'- --aCGAcGACAGCGUGCcg-CCGCGCGg -3' miRNA: 3'- cggGUU-UUGUCGCGCGuugGGCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 47881 | 0.68 | 0.513367 |
Target: 5'- cGCCaucu-CGGCGUGCAcgucGCCacaaGCGCGu -3' miRNA: 3'- -CGGguuuuGUCGCGCGU----UGGg---CGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 20528 | 0.68 | 0.513367 |
Target: 5'- cGCUCGucgguGACGaCGCGCAGCUCG-GCGg -3' miRNA: 3'- -CGGGUu----UUGUcGCGCGUUGGGCgCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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