Results 41 - 60 of 251 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13001 | 5' | -56.7 | NC_003387.1 | + | 15505 | 0.71 | 0.327884 |
Target: 5'- cGCCCAcgGCGGCGUuuaugaGCAccGCCUGCuGCa -3' miRNA: 3'- -CGGGUuuUGUCGCG------CGU--UGGGCG-CGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 1704 | 0.71 | 0.327884 |
Target: 5'- cGCUCugcGCuuGCGUGCAugCCGCGUGc -3' miRNA: 3'- -CGGGuuuUGu-CGCGCGUugGGCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 28065 | 0.71 | 0.320013 |
Target: 5'- aCCCu---CGGCGCugGCGACCuCGCGCa -3' miRNA: 3'- cGGGuuuuGUCGCG--CGUUGG-GCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 10320 | 0.71 | 0.339143 |
Target: 5'- uGCUCGAAcugcuccucagucagGCAGCcguuGCGCAGCCCGCa-- -3' miRNA: 3'- -CGGGUUU---------------UGUCG----CGCGUUGGGCGcgc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 35859 | 0.71 | 0.352351 |
Target: 5'- cGCCUggGcguGCGGCGC-CAucuCCuCGCGCGg -3' miRNA: 3'- -CGGGuuU---UGUCGCGcGUu--GG-GCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 43657 | 0.71 | 0.358243 |
Target: 5'- aGCUUGAGGuCAGCcaggcccgccuucuGCGCGAUCUGCGCGa -3' miRNA: 3'- -CGGGUUUU-GUCG--------------CGCGUUGGGCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 32805 | 0.71 | 0.351515 |
Target: 5'- aCCUGGcGCAGCucaagcaaucucaGCGCAGCCCGCaccGCGg -3' miRNA: 3'- cGGGUUuUGUCG-------------CGCGUUGGGCG---CGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 42895 | 0.71 | 0.344054 |
Target: 5'- gGCCgGGGGcCAGCacaaaaGCGCAGCCUGCaGCGc -3' miRNA: 3'- -CGGgUUUU-GUCG------CGCGUUGGGCG-CGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 45936 | 0.71 | 0.335898 |
Target: 5'- uGCCCG----AGCGUGUucgccgacGGCCCGCGCa -3' miRNA: 3'- -CGGGUuuugUCGCGCG--------UUGGGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 27179 | 0.71 | 0.358243 |
Target: 5'- uGCCCcu--CGGCgugugguggcgcgaGCGCAACCgGCGCa -3' miRNA: 3'- -CGGGuuuuGUCG--------------CGCGUUGGgCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 25175 | 0.71 | 0.33509 |
Target: 5'- gGCCCGAGGCGGUcaGCgaggcucauacagGCAACCuCGCgGCGg -3' miRNA: 3'- -CGGGUUUUGUCG--CG-------------CGUUGG-GCG-CGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 40829 | 0.71 | 0.360789 |
Target: 5'- gGCaCAAGACGGCGC-CGAUCgUGCGCGa -3' miRNA: 3'- -CGgGUUUUGUCGCGcGUUGG-GCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 15125 | 0.71 | 0.352351 |
Target: 5'- cGCCUGAccCuGUGCGCGACCCGauugcCGCGu -3' miRNA: 3'- -CGGGUUuuGuCGCGCGUUGGGC-----GCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 17716 | 0.71 | 0.352351 |
Target: 5'- aGUUCGAGGCGGUGCGCcccGGCCCG-GCc -3' miRNA: 3'- -CGGGUUUUGUCGCGCG---UUGGGCgCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 40011 | 0.71 | 0.360789 |
Target: 5'- aCCUAGAGCcccGCGgGC-GCUCGCGCGg -3' miRNA: 3'- cGGGUUUUGu--CGCgCGuUGGGCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 124 | 0.71 | 0.360789 |
Target: 5'- cGCCuCGAuGCGGuCGCccucGCGAUCCGCGCc -3' miRNA: 3'- -CGG-GUUuUGUC-GCG----CGUUGGGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 5124 | 0.7 | 0.405048 |
Target: 5'- gGCgaGAAccGCAGCGUGCGACCCGauCGg -3' miRNA: 3'- -CGggUUU--UGUCGCGCGUUGGGCgcGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 43283 | 0.7 | 0.414301 |
Target: 5'- gGCgCAGAACAGCuCGgcGCCCGCGUc -3' miRNA: 3'- -CGgGUUUUGUCGcGCguUGGGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 11614 | 0.7 | 0.405048 |
Target: 5'- aUCCGGucguGCAGCGCcaGCAGCUCGCGg- -3' miRNA: 3'- cGGGUUu---UGUCGCG--CGUUGGGCGCgc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 1304 | 0.7 | 0.414301 |
Target: 5'- aGUUCGAGGCGGCGcCGCAggcGCUCGC-CGg -3' miRNA: 3'- -CGGGUUUUGUCGC-GCGU---UGGGCGcGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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