Results 61 - 80 of 251 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
13001 | 5' | -56.7 | NC_003387.1 | + | 44593 | 0.7 | 0.377205 |
Target: 5'- uGCCCGGccgggacAGCAGCGCGUAcgagcugggcucGCCCucGgGCGg -3' miRNA: 3'- -CGGGUU-------UUGUCGCGCGU------------UGGG--CgCGC- -5' |
|||||||
13001 | 5' | -56.7 | NC_003387.1 | + | 35748 | 0.7 | 0.386936 |
Target: 5'- cGCCCGcAACAucuaCGCGCAcCCCGUuuGCGa -3' miRNA: 3'- -CGGGUuUUGUc---GCGCGUuGGGCG--CGC- -5' |
|||||||
13001 | 5' | -56.7 | NC_003387.1 | + | 30851 | 0.7 | 0.369367 |
Target: 5'- cGCCCAuAGCAGCucguGCGCGucggcACCUgGUGCGc -3' miRNA: 3'- -CGGGUuUUGUCG----CGCGU-----UGGG-CGCGC- -5' |
|||||||
13001 | 5' | -56.7 | NC_003387.1 | + | 33435 | 0.7 | 0.378083 |
Target: 5'- uGCCUGcuGCuGCGCGCcaccACCuCGCGCa -3' miRNA: 3'- -CGGGUuuUGuCGCGCGu---UGG-GCGCGc -5' |
|||||||
13001 | 5' | -56.7 | NC_003387.1 | + | 18321 | 0.7 | 0.386936 |
Target: 5'- cGCCCGGcAACGGCGUGgCcgucguGCCCGC-CGg -3' miRNA: 3'- -CGGGUU-UUGUCGCGC-Gu-----UGGGCGcGC- -5' |
|||||||
13001 | 5' | -56.7 | NC_003387.1 | + | 23409 | 0.7 | 0.386936 |
Target: 5'- uGCCCGAca-AGCGCGgcGCCUGCGUc -3' miRNA: 3'- -CGGGUUuugUCGCGCguUGGGCGCGc -5' |
|||||||
13001 | 5' | -56.7 | NC_003387.1 | + | 1304 | 0.7 | 0.414301 |
Target: 5'- aGUUCGAGGCGGCGcCGCAggcGCUCGC-CGg -3' miRNA: 3'- -CGGGUUUUGUCGC-GCGU---UGGGCGcGC- -5' |
|||||||
13001 | 5' | -56.7 | NC_003387.1 | + | 5124 | 0.7 | 0.405048 |
Target: 5'- gGCgaGAAccGCAGCGUGCGACCCGauCGg -3' miRNA: 3'- -CGggUUU--UGUCGCGCGUUGGGCgcGC- -5' |
|||||||
13001 | 5' | -56.7 | NC_003387.1 | + | 52577 | 0.7 | 0.368502 |
Target: 5'- gGCCCAGcucGGCGGCGCggaucgcgaggGCGACCgcaucgaggcgggCGCGCa -3' miRNA: 3'- -CGGGUU---UUGUCGCG-----------CGUUGG-------------GCGCGc -5' |
|||||||
13001 | 5' | -56.7 | NC_003387.1 | + | 3727 | 0.7 | 0.369366 |
Target: 5'- gGCCaCAGccacgcgaucGACGGC-CGCAuGCCCGCGUGc -3' miRNA: 3'- -CGG-GUU----------UUGUCGcGCGU-UGGGCGCGC- -5' |
|||||||
13001 | 5' | -56.7 | NC_003387.1 | + | 5805 | 0.7 | 0.378083 |
Target: 5'- uGCCCGGcuCaAGCGUGCGGCC-GUGCa -3' miRNA: 3'- -CGGGUUuuG-UCGCGCGUUGGgCGCGc -5' |
|||||||
13001 | 5' | -56.7 | NC_003387.1 | + | 42446 | 0.7 | 0.378083 |
Target: 5'- cGCCCGAGGugucgaacuuCGGgGCGaccuugAGCCCGCGCu -3' miRNA: 3'- -CGGGUUUU----------GUCgCGCg-----UUGGGCGCGc -5' |
|||||||
13001 | 5' | -56.7 | NC_003387.1 | + | 41060 | 0.7 | 0.386045 |
Target: 5'- aGCCCGAucggguuAGCGGUcaGCGCGACguugaauagccaCUGCGCGg -3' miRNA: 3'- -CGGGUU-------UUGUCG--CGCGUUG------------GGCGCGC- -5' |
|||||||
13001 | 5' | -56.7 | NC_003387.1 | + | 22692 | 0.7 | 0.386936 |
Target: 5'- uGUCgAcgGCGGCGCugGCGGCCUGgGCGa -3' miRNA: 3'- -CGGgUuuUGUCGCG--CGUUGGGCgCGC- -5' |
|||||||
13001 | 5' | -56.7 | NC_003387.1 | + | 46706 | 0.7 | 0.395925 |
Target: 5'- aGCCUcuuGGAugAGCGagGCGACCUcgGCGCGu -3' miRNA: 3'- -CGGG---UUUugUCGCg-CGUUGGG--CGCGC- -5' |
|||||||
13001 | 5' | -56.7 | NC_003387.1 | + | 32845 | 0.7 | 0.405048 |
Target: 5'- gGCCCAGcACGGUGUcuuGCAgggcGCCCaGCGCc -3' miRNA: 3'- -CGGGUUuUGUCGCG---CGU----UGGG-CGCGc -5' |
|||||||
13001 | 5' | -56.7 | NC_003387.1 | + | 11614 | 0.7 | 0.405048 |
Target: 5'- aUCCGGucguGCAGCGCcaGCAGCUCGCGg- -3' miRNA: 3'- cGGGUUu---UGUCGCG--CGUUGGGCGCgc -5' |
|||||||
13001 | 5' | -56.7 | NC_003387.1 | + | 43283 | 0.7 | 0.414301 |
Target: 5'- gGCgCAGAACAGCuCGgcGCCCGCGUc -3' miRNA: 3'- -CGgGUUUUGUCGcGCguUGGGCGCGc -5' |
|||||||
13001 | 5' | -56.7 | NC_003387.1 | + | 23379 | 0.7 | 0.369366 |
Target: 5'- cGCCgAGGAUgaAGCGCGCGGCggcuuucaGCGCGg -3' miRNA: 3'- -CGGgUUUUG--UCGCGCGUUGgg------CGCGC- -5' |
|||||||
13001 | 5' | -56.7 | NC_003387.1 | + | 36860 | 0.7 | 0.39502 |
Target: 5'- aGCCaCAuguAC-GCGCGCAcguugcaGCCCGCGUc -3' miRNA: 3'- -CGG-GUuu-UGuCGCGCGU-------UGGGCGCGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home