Results 81 - 100 of 251 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
13001 | 5' | -56.7 | NC_003387.1 | + | 35748 | 0.7 | 0.386936 |
Target: 5'- cGCCCGcAACAucuaCGCGCAcCCCGUuuGCGa -3' miRNA: 3'- -CGGGUuUUGUc---GCGCGUuGGGCG--CGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 490 | 0.7 | 0.395925 |
Target: 5'- uGCUCGucGCGaUGCGC-GCCCGCGUGg -3' miRNA: 3'- -CGGGUuuUGUcGCGCGuUGGGCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 30274 | 0.7 | 0.414301 |
Target: 5'- aCCgCGAGGCcaacGC-CGCGGCCCGCGCc -3' miRNA: 3'- cGG-GUUUUGu---CGcGCGUUGGGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 32528 | 0.7 | 0.41337 |
Target: 5'- cGCCCGgccgugcGAggcGCAGCaGCGCAucaaCCGCGCc -3' miRNA: 3'- -CGGGU-------UU---UGUCG-CGCGUug--GGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 18039 | 0.7 | 0.399558 |
Target: 5'- uGCCCGAGGCGGCGUuucagaacuucaccgGCGuuGCCCaGCgGCa -3' miRNA: 3'- -CGGGUUUUGUCGCG---------------CGU--UGGG-CG-CGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 49323 | 0.7 | 0.395925 |
Target: 5'- gGCCCcGAGCAugaucGCGCGCAAgCUGaGCGu -3' miRNA: 3'- -CGGGuUUUGU-----CGCGCGUUgGGCgCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 44744 | 0.7 | 0.395925 |
Target: 5'- gGCgCCGAAgcGCAGCaCGCcGCCCGcCGUGa -3' miRNA: 3'- -CG-GGUUU--UGUCGcGCGuUGGGC-GCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 21577 | 0.7 | 0.395925 |
Target: 5'- gGCCCA----GGCGCGCGGCaucagcgaggCCGaCGCGg -3' miRNA: 3'- -CGGGUuuugUCGCGCGUUG----------GGC-GCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 2934 | 0.7 | 0.395925 |
Target: 5'- uGUCgCGGuuCGGCGC-CAACCCGCaGCGc -3' miRNA: 3'- -CGG-GUUuuGUCGCGcGUUGGGCG-CGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 318 | 0.7 | 0.418039 |
Target: 5'- aGCCCGAGcccggcgacacGCAcgccaagauccgcguGCGCGCGgucgAUCUGCGCGa -3' miRNA: 3'- -CGGGUUU-----------UGU---------------CGCGCGU----UGGGCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 52577 | 0.7 | 0.368502 |
Target: 5'- gGCCCAGcucGGCGGCGCggaucgcgaggGCGACCgcaucgaggcgggCGCGCa -3' miRNA: 3'- -CGGGUU---UUGUCGCG-----------CGUUGG-------------GCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 2422 | 0.7 | 0.41337 |
Target: 5'- cGCCUggGAGAUguGGCaGCGCAACCgcauggaCGCGCGc -3' miRNA: 3'- -CGGG--UUUUG--UCG-CGCGUUGG-------GCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 6946 | 0.69 | 0.452576 |
Target: 5'- gGCCUgcgcAGCGGCGgGCAggcGCCacaGCGCGc -3' miRNA: 3'- -CGGGuu--UUGUCGCgCGU---UGGg--CGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 3150 | 0.69 | 0.423684 |
Target: 5'- cGCCCG--GCAGCGgGCGcACCuCG-GCGa -3' miRNA: 3'- -CGGGUuuUGUCGCgCGU-UGG-GCgCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 15702 | 0.69 | 0.434151 |
Target: 5'- uGCCCGGccauauccauugcguACA-CGCGgAACCCGCGCc -3' miRNA: 3'- -CGGGUUu--------------UGUcGCGCgUUGGGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 25805 | 0.69 | 0.439923 |
Target: 5'- aGCCCGGcgaacaggaacAGCAGCGCGgCGuacGCCaggaaugacggccaCGCGCGa -3' miRNA: 3'- -CGGGUU-----------UUGUCGCGC-GU---UGG--------------GCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 7654 | 0.69 | 0.441856 |
Target: 5'- gGCCCAGGACGGCccucgacGCGCucggcGACCUGCu-- -3' miRNA: 3'- -CGGGUUUUGUCG-------CGCG-----UUGGGCGcgc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 45878 | 0.69 | 0.446712 |
Target: 5'- cGCCCuGAGCGGuCGCGCucacACCCagcacuaggcgaaccGCGCc -3' miRNA: 3'- -CGGGuUUUGUC-GCGCGu---UGGG---------------CGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 42849 | 0.69 | 0.451596 |
Target: 5'- aGCCCuucucgaacgcauGGAACAcCGCGguGCCCG-GCGg -3' miRNA: 3'- -CGGG-------------UUUUGUcGCGCguUGGGCgCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 30756 | 0.69 | 0.461452 |
Target: 5'- cGCaCCGuaguuGAACAGCGcCGCAgacgccuGCCCGcCGCc -3' miRNA: 3'- -CG-GGU-----UUUGUCGC-GCGU-------UGGGC-GCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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