miRNA display CGI


Results 101 - 120 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 34599 0.69 0.462444
Target:  5'- uGCCCGGugacguACGGCGUccacGCAuaauCCUGCGCc -3'
miRNA:   3'- -CGGGUUu-----UGUCGCG----CGUu---GGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 6756 0.69 0.462444
Target:  5'- gGCCC---ACAGCGCacGCcucGCCCuuGCGCGg -3'
miRNA:   3'- -CGGGuuuUGUCGCG--CGu--UGGG--CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 6946 0.69 0.452576
Target:  5'- gGCCUgcgcAGCGGCGgGCAggcGCCacaGCGCGc -3'
miRNA:   3'- -CGGGuu--UUGUCGCgCGU---UGGg--CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 45878 0.69 0.446712
Target:  5'- cGCCCuGAGCGGuCGCGCucacACCCagcacuaggcgaaccGCGCc -3'
miRNA:   3'- -CGGGuUUUGUC-GCGCGu---UGGG---------------CGCGc -5'
13001 5' -56.7 NC_003387.1 + 7654 0.69 0.441856
Target:  5'- gGCCCAGGACGGCccucgacGCGCucggcGACCUGCu-- -3'
miRNA:   3'- -CGGGUUUUGUCG-------CGCG-----UUGGGCGcgc -5'
13001 5' -56.7 NC_003387.1 + 3150 0.69 0.423684
Target:  5'- cGCCCG--GCAGCGgGCGcACCuCG-GCGa -3'
miRNA:   3'- -CGGGUuuUGUCGCgCGU-UGG-GCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 15702 0.69 0.434151
Target:  5'- uGCCCGGccauauccauugcguACA-CGCGgAACCCGCGCc -3'
miRNA:   3'- -CGGGUUu--------------UGUcGCGCgUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 25805 0.69 0.439923
Target:  5'- aGCCCGGcgaacaggaacAGCAGCGCGgCGuacGCCaggaaugacggccaCGCGCGa -3'
miRNA:   3'- -CGGGUU-----------UUGUCGCGC-GU---UGG--------------GCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 11577 0.69 0.462444
Target:  5'- gGCaCCAAGgcguACGGCGuCGCGAUggCCGUGUGg -3'
miRNA:   3'- -CG-GGUUU----UGUCGC-GCGUUG--GGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 13990 0.69 0.462444
Target:  5'- cGCCCAAguauccgaauGACuGGCaGgGCAACCCG-GCGu -3'
miRNA:   3'- -CGGGUU----------UUG-UCG-CgCGUUGGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 19302 0.69 0.466422
Target:  5'- aGCCCGAucCAGCucgGCGUGACCgaguacagcgacgaGCGCGg -3'
miRNA:   3'- -CGGGUUuuGUCG---CGCGUUGGg-------------CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 47881 0.68 0.513367
Target:  5'- cGCCaucu-CGGCGUGCAcgucGCCacaaGCGCGu -3'
miRNA:   3'- -CGGguuuuGUCGCGCGU----UGGg---CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 34167 0.68 0.4927
Target:  5'- cGCCCucGGCcuuGCGCucgaaCGACUCGCGCa -3'
miRNA:   3'- -CGGGuuUUGu--CGCGc----GUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 44351 0.68 0.4927
Target:  5'- cGUCCAGAACAccGCGgccUGCAugCCGaacaGCGg -3'
miRNA:   3'- -CGGGUUUUGU--CGC---GCGUugGGCg---CGC- -5'
13001 5' -56.7 NC_003387.1 + 27270 0.68 0.502988
Target:  5'- aGCCgCGAcgcgGGCAGCGCGC--CCUGCGa- -3'
miRNA:   3'- -CGG-GUU----UUGUCGCGCGuuGGGCGCgc -5'
13001 5' -56.7 NC_003387.1 + 36290 0.68 0.502988
Target:  5'- gGUCCAGAACgcauGGCGCGCAACggauCUGUgaacGCGa -3'
miRNA:   3'- -CGGGUUUUG----UCGCGCGUUG----GGCG----CGC- -5'
13001 5' -56.7 NC_003387.1 + 19733 0.68 0.523834
Target:  5'- gGCCCGcucGAAC-GCGgGCAcguAgUCGCGCGg -3'
miRNA:   3'- -CGGGU---UUUGuCGCgCGU---UgGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 18095 0.68 0.502988
Target:  5'- uGCCCGAGGCuGCGCagguagGCGGCCaUGC-CGg -3'
miRNA:   3'- -CGGGUUUUGuCGCG------CGUUGG-GCGcGC- -5'
13001 5' -56.7 NC_003387.1 + 20528 0.68 0.513367
Target:  5'- cGCUCGucgguGACGaCGCGCAGCUCG-GCGg -3'
miRNA:   3'- -CGGGUu----UUGUcGCGCGUUGGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 14430 0.68 0.523834
Target:  5'- --aCGAcGACAGCGUGCcg-CCGCGCGg -3'
miRNA:   3'- cggGUU-UUGUCGCGCGuugGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.