Results 121 - 140 of 251 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13001 | 5' | -56.7 | NC_003387.1 | + | 24456 | 0.68 | 0.4927 |
Target: 5'- aGCCgAcGAGCAGCGCGaggugcugAACCUGCuGCGc -3' miRNA: 3'- -CGGgU-UUUGUCGCGCg-------UUGGGCG-CGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 8088 | 0.68 | 0.48251 |
Target: 5'- uGCCgGu--CGGCGC-CAACCCGCcCGa -3' miRNA: 3'- -CGGgUuuuGUCGCGcGUUGGGCGcGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 4199 | 0.68 | 0.481497 |
Target: 5'- cGCCCGAcuacgugcAGCAGUGggaGCAggauuaccugcagGCCCGcCGCGa -3' miRNA: 3'- -CGGGUU--------UUGUCGCg--CGU-------------UGGGC-GCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 45834 | 0.68 | 0.472423 |
Target: 5'- gGCCCGcGACGaCGcCGCGGagauCCUGCGCGa -3' miRNA: 3'- -CGGGUuUUGUcGC-GCGUU----GGGCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 23713 | 0.68 | 0.472423 |
Target: 5'- cGCCC-AGGCGGCGaaCGACUCgGCGCa -3' miRNA: 3'- -CGGGuUUUGUCGCgcGUUGGG-CGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 44351 | 0.68 | 0.4927 |
Target: 5'- cGUCCAGAACAccGCGgccUGCAugCCGaacaGCGg -3' miRNA: 3'- -CGGGUUUUGU--CGC---GCGUugGGCg---CGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 34167 | 0.68 | 0.4927 |
Target: 5'- cGCCCucGGCcuuGCGCucgaaCGACUCGCGCa -3' miRNA: 3'- -CGGGuuUUGu--CGCGc----GUUGGGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 42047 | 0.68 | 0.47142 |
Target: 5'- gGCgCCAAGaucgaccGCGGCGUGUacGACCUgGCGCGc -3' miRNA: 3'- -CG-GGUUU-------UGUCGCGCG--UUGGG-CGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 28112 | 0.68 | 0.468418 |
Target: 5'- cGCCCA----GGCGCGCAAgcucaaucguguaCUGCGCGu -3' miRNA: 3'- -CGGGUuuugUCGCGCGUUg------------GGCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 11418 | 0.68 | 0.472423 |
Target: 5'- gGCCCcGAGguGCugucgucgGUGCucguGCCCGCGCu -3' miRNA: 3'- -CGGGuUUUguCG--------CGCGu---UGGGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 52030 | 0.68 | 0.472423 |
Target: 5'- gGCgCAAuGACguGGCGCGCGACCuCGCuaaGCGu -3' miRNA: 3'- -CGgGUU-UUG--UCGCGCGUUGG-GCG---CGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 658 | 0.68 | 0.4927 |
Target: 5'- cGCCCGAugaaccauucGACGGCGaCGCuuAGCgaggUCGCGCGc -3' miRNA: 3'- -CGGGUU----------UUGUCGC-GCG--UUG----GGCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 52358 | 0.68 | 0.472423 |
Target: 5'- gGCgCGGAACcGCucGCGCAGaucgaCCGCGCGc -3' miRNA: 3'- -CGgGUUUUGuCG--CGCGUUg----GGCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 9600 | 0.68 | 0.481497 |
Target: 5'- cGCCCAccaccGCGGCGcCGCGccgucgcgcucguACCCgGCGCc -3' miRNA: 3'- -CGGGUuu---UGUCGC-GCGU-------------UGGG-CGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 4470 | 0.68 | 0.491677 |
Target: 5'- aGCCCGAGcugcuggccGCGGCcgaccggGCGCGACacgauCGUGCGg -3' miRNA: 3'- -CGGGUUU---------UGUCG-------CGCGUUGg----GCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 5319 | 0.68 | 0.4927 |
Target: 5'- gGCUCGGGGCGGgGC-CGGuugcCCCGCGCu -3' miRNA: 3'- -CGGGUUUUGUCgCGcGUU----GGGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 15141 | 0.68 | 0.4927 |
Target: 5'- aUCCAGuuguggugaccgGGCAGCGUgaugaGCAGCCCGUcgGCGa -3' miRNA: 3'- cGGGUU------------UUGUCGCG-----CGUUGGGCG--CGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 21833 | 0.68 | 0.472423 |
Target: 5'- aGCgCAAGcGCAGCGUGUGgacACCgGCGCa -3' miRNA: 3'- -CGgGUUU-UGUCGCGCGU---UGGgCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 10842 | 0.68 | 0.4927 |
Target: 5'- uCCCAAuACGGC-UGCAGgCCGUGCc -3' miRNA: 3'- cGGGUUuUGUCGcGCGUUgGGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 25434 | 0.68 | 0.4927 |
Target: 5'- uGCUUAucGGAUacucgcagGGCGCGCuGCCCGCGUc -3' miRNA: 3'- -CGGGU--UUUG--------UCGCGCGuUGGGCGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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