miRNA display CGI


Results 41 - 60 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 19656 0.71 0.327884
Target:  5'- cGCUCGcgGCgcuuGGCGCGCAcCCgGUGCGg -3'
miRNA:   3'- -CGGGUuuUG----UCGCGCGUuGGgCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 15505 0.71 0.327884
Target:  5'- cGCCCAcgGCGGCGUuuaugaGCAccGCCUGCuGCa -3'
miRNA:   3'- -CGGGUuuUGUCGCG------CGU--UGGGCG-CGc -5'
13001 5' -56.7 NC_003387.1 + 25175 0.71 0.33509
Target:  5'- gGCCCGAGGCGGUcaGCgaggcucauacagGCAACCuCGCgGCGg -3'
miRNA:   3'- -CGGGUUUUGUCG--CG-------------CGUUGG-GCG-CGC- -5'
13001 5' -56.7 NC_003387.1 + 45936 0.71 0.335898
Target:  5'- uGCCCG----AGCGUGUucgccgacGGCCCGCGCa -3'
miRNA:   3'- -CGGGUuuugUCGCGCG--------UUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 10320 0.71 0.339143
Target:  5'- uGCUCGAAcugcuccucagucagGCAGCcguuGCGCAGCCCGCa-- -3'
miRNA:   3'- -CGGGUUU---------------UGUCG----CGCGUUGGGCGcgc -5'
13001 5' -56.7 NC_003387.1 + 42895 0.71 0.344054
Target:  5'- gGCCgGGGGcCAGCacaaaaGCGCAGCCUGCaGCGc -3'
miRNA:   3'- -CGGgUUUU-GUCG------CGCGUUGGGCG-CGC- -5'
13001 5' -56.7 NC_003387.1 + 32805 0.71 0.351515
Target:  5'- aCCUGGcGCAGCucaagcaaucucaGCGCAGCCCGCaccGCGg -3'
miRNA:   3'- cGGGUUuUGUCG-------------CGCGUUGGGCG---CGC- -5'
13001 5' -56.7 NC_003387.1 + 17716 0.71 0.352351
Target:  5'- aGUUCGAGGCGGUGCGCcccGGCCCG-GCc -3'
miRNA:   3'- -CGGGUUUUGUCGCGCG---UUGGGCgCGc -5'
13001 5' -56.7 NC_003387.1 + 15125 0.71 0.352351
Target:  5'- cGCCUGAccCuGUGCGCGACCCGauugcCGCGu -3'
miRNA:   3'- -CGGGUUuuGuCGCGCGUUGGGC-----GCGC- -5'
13001 5' -56.7 NC_003387.1 + 35859 0.71 0.352351
Target:  5'- cGCCUggGcguGCGGCGC-CAucuCCuCGCGCGg -3'
miRNA:   3'- -CGGGuuU---UGUCGCGcGUu--GG-GCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 43657 0.71 0.358243
Target:  5'- aGCUUGAGGuCAGCcaggcccgccuucuGCGCGAUCUGCGCGa -3'
miRNA:   3'- -CGGGUUUU-GUCG--------------CGCGUUGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 27179 0.71 0.358243
Target:  5'- uGCCCcu--CGGCgugugguggcgcgaGCGCAACCgGCGCa -3'
miRNA:   3'- -CGGGuuuuGUCG--------------CGCGUUGGgCGCGc -5'
13001 5' -56.7 NC_003387.1 + 40829 0.71 0.360789
Target:  5'- gGCaCAAGACGGCGC-CGAUCgUGCGCGa -3'
miRNA:   3'- -CGgGUUUUGUCGCGcGUUGG-GCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 124 0.71 0.360789
Target:  5'- cGCCuCGAuGCGGuCGCccucGCGAUCCGCGCc -3'
miRNA:   3'- -CGG-GUUuUGUC-GCG----CGUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 40011 0.71 0.360789
Target:  5'- aCCUAGAGCcccGCGgGC-GCUCGCGCGg -3'
miRNA:   3'- cGGGUUUUGu--CGCgCGuUGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 41965 0.71 0.360789
Target:  5'- cGCCagcgaGGAGCuGCGCGCGGaggCCGcCGCGg -3'
miRNA:   3'- -CGGg----UUUUGuCGCGCGUUg--GGC-GCGC- -5'
13001 5' -56.7 NC_003387.1 + 52577 0.7 0.368502
Target:  5'- gGCCCAGcucGGCGGCGCggaucgcgaggGCGACCgcaucgaggcgggCGCGCa -3'
miRNA:   3'- -CGGGUU---UUGUCGCG-----------CGUUGG-------------GCGCGc -5'
13001 5' -56.7 NC_003387.1 + 23379 0.7 0.369366
Target:  5'- cGCCgAGGAUgaAGCGCGCGGCggcuuucaGCGCGg -3'
miRNA:   3'- -CGGgUUUUG--UCGCGCGUUGgg------CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 3727 0.7 0.369366
Target:  5'- gGCCaCAGccacgcgaucGACGGC-CGCAuGCCCGCGUGc -3'
miRNA:   3'- -CGG-GUU----------UUGUCGcGCGU-UGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 42270 0.7 0.369366
Target:  5'- -aCCGGcgaccGACAGCGCGCugucgauGCCCGC-CGa -3'
miRNA:   3'- cgGGUU-----UUGUCGCGCGu------UGGGCGcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.