miRNA display CGI


Results 61 - 80 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 30851 0.7 0.369367
Target:  5'- cGCCCAuAGCAGCucguGCGCGucggcACCUgGUGCGc -3'
miRNA:   3'- -CGGGUuUUGUCG----CGCGU-----UGGG-CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 44593 0.7 0.377205
Target:  5'- uGCCCGGccgggacAGCAGCGCGUAcgagcugggcucGCCCucGgGCGg -3'
miRNA:   3'- -CGGGUU-------UUGUCGCGCGU------------UGGG--CgCGC- -5'
13001 5' -56.7 NC_003387.1 + 33435 0.7 0.378083
Target:  5'- uGCCUGcuGCuGCGCGCcaccACCuCGCGCa -3'
miRNA:   3'- -CGGGUuuUGuCGCGCGu---UGG-GCGCGc -5'
13001 5' -56.7 NC_003387.1 + 5805 0.7 0.378083
Target:  5'- uGCCCGGcuCaAGCGUGCGGCC-GUGCa -3'
miRNA:   3'- -CGGGUUuuG-UCGCGCGUUGGgCGCGc -5'
13001 5' -56.7 NC_003387.1 + 48424 0.7 0.378083
Target:  5'- uGCCgGGucGCGGUGCGCugcucGCCCGCGg- -3'
miRNA:   3'- -CGGgUUu-UGUCGCGCGu----UGGGCGCgc -5'
13001 5' -56.7 NC_003387.1 + 42446 0.7 0.378083
Target:  5'- cGCCCGAGGugucgaacuuCGGgGCGaccuugAGCCCGCGCu -3'
miRNA:   3'- -CGGGUUUU----------GUCgCGCg-----UUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 41060 0.7 0.386045
Target:  5'- aGCCCGAucggguuAGCGGUcaGCGCGACguugaauagccaCUGCGCGg -3'
miRNA:   3'- -CGGGUU-------UUGUCG--CGCGUUG------------GGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 18321 0.7 0.386936
Target:  5'- cGCCCGGcAACGGCGUGgCcgucguGCCCGC-CGg -3'
miRNA:   3'- -CGGGUU-UUGUCGCGC-Gu-----UGGGCGcGC- -5'
13001 5' -56.7 NC_003387.1 + 35748 0.7 0.386936
Target:  5'- cGCCCGcAACAucuaCGCGCAcCCCGUuuGCGa -3'
miRNA:   3'- -CGGGUuUUGUc---GCGCGUuGGGCG--CGC- -5'
13001 5' -56.7 NC_003387.1 + 22692 0.7 0.386936
Target:  5'- uGUCgAcgGCGGCGCugGCGGCCUGgGCGa -3'
miRNA:   3'- -CGGgUuuUGUCGCG--CGUUGGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 23409 0.7 0.386936
Target:  5'- uGCCCGAca-AGCGCGgcGCCUGCGUc -3'
miRNA:   3'- -CGGGUUuugUCGCGCguUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 36860 0.7 0.39502
Target:  5'- aGCCaCAuguAC-GCGCGCAcguugcaGCCCGCGUc -3'
miRNA:   3'- -CGG-GUuu-UGuCGCGCGU-------UGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 490 0.7 0.395925
Target:  5'- uGCUCGucGCGaUGCGC-GCCCGCGUGg -3'
miRNA:   3'- -CGGGUuuUGUcGCGCGuUGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 8254 0.7 0.395925
Target:  5'- aCCCGucACgcgGGCGUGCAgcGCCuCGCGCa -3'
miRNA:   3'- cGGGUuuUG---UCGCGCGU--UGG-GCGCGc -5'
13001 5' -56.7 NC_003387.1 + 44744 0.7 0.395925
Target:  5'- gGCgCCGAAgcGCAGCaCGCcGCCCGcCGUGa -3'
miRNA:   3'- -CG-GGUUU--UGUCGcGCGuUGGGC-GCGC- -5'
13001 5' -56.7 NC_003387.1 + 21577 0.7 0.395925
Target:  5'- gGCCCA----GGCGCGCGGCaucagcgaggCCGaCGCGg -3'
miRNA:   3'- -CGGGUuuugUCGCGCGUUG----------GGC-GCGC- -5'
13001 5' -56.7 NC_003387.1 + 49323 0.7 0.395925
Target:  5'- gGCCCcGAGCAugaucGCGCGCAAgCUGaGCGu -3'
miRNA:   3'- -CGGGuUUUGU-----CGCGCGUUgGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 2934 0.7 0.395925
Target:  5'- uGUCgCGGuuCGGCGC-CAACCCGCaGCGc -3'
miRNA:   3'- -CGG-GUUuuGUCGCGcGUUGGGCG-CGC- -5'
13001 5' -56.7 NC_003387.1 + 46706 0.7 0.395925
Target:  5'- aGCCUcuuGGAugAGCGagGCGACCUcgGCGCGu -3'
miRNA:   3'- -CGGG---UUUugUCGCg-CGUUGGG--CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 18039 0.7 0.399558
Target:  5'- uGCCCGAGGCGGCGUuucagaacuucaccgGCGuuGCCCaGCgGCa -3'
miRNA:   3'- -CGGGUUUUGUCGCG---------------CGU--UGGG-CG-CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.