miRNA display CGI


Results 81 - 100 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 5124 0.7 0.405048
Target:  5'- gGCgaGAAccGCAGCGUGCGACCCGauCGg -3'
miRNA:   3'- -CGggUUU--UGUCGCGCGUUGGGCgcGC- -5'
13001 5' -56.7 NC_003387.1 + 11614 0.7 0.405048
Target:  5'- aUCCGGucguGCAGCGCcaGCAGCUCGCGg- -3'
miRNA:   3'- cGGGUUu---UGUCGCG--CGUUGGGCGCgc -5'
13001 5' -56.7 NC_003387.1 + 32845 0.7 0.405048
Target:  5'- gGCCCAGcACGGUGUcuuGCAgggcGCCCaGCGCc -3'
miRNA:   3'- -CGGGUUuUGUCGCG---CGU----UGGG-CGCGc -5'
13001 5' -56.7 NC_003387.1 + 2422 0.7 0.41337
Target:  5'- cGCCUggGAGAUguGGCaGCGCAACCgcauggaCGCGCGc -3'
miRNA:   3'- -CGGG--UUUUG--UCG-CGCGUUGG-------GCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 5791 0.7 0.41337
Target:  5'- -aCCAGAACAagccGCccgcaccaccgaaGCGCAAcCCCGCGCa -3'
miRNA:   3'- cgGGUUUUGU----CG-------------CGCGUU-GGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 32528 0.7 0.41337
Target:  5'- cGCCCGgccgugcGAggcGCAGCaGCGCAucaaCCGCGCc -3'
miRNA:   3'- -CGGGU-------UU---UGUCG-CGCGUug--GGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 43283 0.7 0.414301
Target:  5'- gGCgCAGAACAGCuCGgcGCCCGCGUc -3'
miRNA:   3'- -CGgGUUUUGUCGcGCguUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 1304 0.7 0.414301
Target:  5'- aGUUCGAGGCGGCGcCGCAggcGCUCGC-CGg -3'
miRNA:   3'- -CGGGUUUUGUCGC-GCGU---UGGGCGcGC- -5'
13001 5' -56.7 NC_003387.1 + 12692 0.7 0.414301
Target:  5'- cGCCCGuuguGGAUuccCGCGCGagcGCCCGCGgGg -3'
miRNA:   3'- -CGGGU----UUUGuc-GCGCGU---UGGGCGCgC- -5'
13001 5' -56.7 NC_003387.1 + 29472 0.7 0.414301
Target:  5'- gGCgCCAgcGAGCAGgGCaCGGCCCGCGa- -3'
miRNA:   3'- -CG-GGU--UUUGUCgCGcGUUGGGCGCgc -5'
13001 5' -56.7 NC_003387.1 + 30274 0.7 0.414301
Target:  5'- aCCgCGAGGCcaacGC-CGCGGCCCGCGCc -3'
miRNA:   3'- cGG-GUUUUGu---CGcGCGUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 318 0.7 0.418039
Target:  5'- aGCCCGAGcccggcgacacGCAcgccaagauccgcguGCGCGCGgucgAUCUGCGCGa -3'
miRNA:   3'- -CGGGUUU-----------UGU---------------CGCGCGU----UGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 44437 0.69 0.423684
Target:  5'- uGCCCGccgacgcgcacgAGGCgcugcgcgaGGCGCuGCAcGCCCGCGUGa -3'
miRNA:   3'- -CGGGU------------UUUG---------UCGCG-CGU-UGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 3150 0.69 0.423684
Target:  5'- cGCCCG--GCAGCGgGCGcACCuCG-GCGa -3'
miRNA:   3'- -CGGGUuuUGUCGCgCGU-UGG-GCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 15702 0.69 0.434151
Target:  5'- uGCCCGGccauauccauugcguACA-CGCGgAACCCGCGCc -3'
miRNA:   3'- -CGGGUUu--------------UGUcGCGCgUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 25805 0.69 0.439923
Target:  5'- aGCCCGGcgaacaggaacAGCAGCGCGgCGuacGCCaggaaugacggccaCGCGCGa -3'
miRNA:   3'- -CGGGUU-----------UUGUCGCGC-GU---UGG--------------GCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 23044 0.69 0.440889
Target:  5'- uGCCCG--GCGGCGUGCcgaucacgcacuACgCCGUGCGc -3'
miRNA:   3'- -CGGGUuuUGUCGCGCGu-----------UG-GGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 7654 0.69 0.441856
Target:  5'- gGCCCAGGACGGCccucgacGCGCucggcGACCUGCu-- -3'
miRNA:   3'- -CGGGUUUUGUCG-------CGCG-----UUGGGCGcgc -5'
13001 5' -56.7 NC_003387.1 + 45878 0.69 0.446712
Target:  5'- cGCCCuGAGCGGuCGCGCucacACCCagcacuaggcgaaccGCGCc -3'
miRNA:   3'- -CGGGuUUUGUC-GCGCGu---UGGG---------------CGCGc -5'
13001 5' -56.7 NC_003387.1 + 15887 0.69 0.450617
Target:  5'- uGCCCGAggacgagGACAGCcCGCAcCCCGagcuggcCGCGa -3'
miRNA:   3'- -CGGGUU-------UUGUCGcGCGUuGGGC-------GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.