miRNA display CGI


Results 101 - 120 of 251 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 42849 0.69 0.451596
Target:  5'- aGCCCuucucgaacgcauGGAACAcCGCGguGCCCG-GCGg -3'
miRNA:   3'- -CGGG-------------UUUUGUcGCGCguUGGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 1761 0.69 0.452576
Target:  5'- aGCCCG--GCGGCgGCGCuggcGCCCGaGCu -3'
miRNA:   3'- -CGGGUuuUGUCG-CGCGu---UGGGCgCGc -5'
13001 5' -56.7 NC_003387.1 + 45517 0.69 0.452576
Target:  5'- gGCCgCAGcgagcuGACGGUGUGCuGgCCGUGCGg -3'
miRNA:   3'- -CGG-GUU------UUGUCGCGCGuUgGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 6946 0.69 0.452576
Target:  5'- gGCCUgcgcAGCGGCGgGCAggcGCCacaGCGCGc -3'
miRNA:   3'- -CGGGuu--UUGUCGCgCGU---UGGg--CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 30756 0.69 0.461452
Target:  5'- cGCaCCGuaguuGAACAGCGcCGCAgacgccuGCCCGcCGCc -3'
miRNA:   3'- -CG-GGU-----UUUGUCGC-GCGU-------UGGGC-GCGc -5'
13001 5' -56.7 NC_003387.1 + 14684 0.69 0.461452
Target:  5'- cGCCCGAucGgGGCGCcgucgccGCGAUCCGuUGCGg -3'
miRNA:   3'- -CGGGUUu-UgUCGCG-------CGUUGGGC-GCGC- -5'
13001 5' -56.7 NC_003387.1 + 11577 0.69 0.462444
Target:  5'- gGCaCCAAGgcguACGGCGuCGCGAUggCCGUGUGg -3'
miRNA:   3'- -CG-GGUUU----UGUCGC-GCGUUG--GGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 6756 0.69 0.462444
Target:  5'- gGCCC---ACAGCGCacGCcucGCCCuuGCGCGg -3'
miRNA:   3'- -CGGGuuuUGUCGCG--CGu--UGGG--CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 13990 0.69 0.462444
Target:  5'- cGCCCAAguauccgaauGACuGGCaGgGCAACCCG-GCGu -3'
miRNA:   3'- -CGGGUU----------UUG-UCG-CgCGUUGGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 34599 0.69 0.462444
Target:  5'- uGCCCGGugacguACGGCGUccacGCAuaauCCUGCGCc -3'
miRNA:   3'- -CGGGUUu-----UGUCGCG----CGUu---GGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 19302 0.69 0.466422
Target:  5'- aGCCCGAucCAGCucgGCGUGACCgaguacagcgacgaGCGCGg -3'
miRNA:   3'- -CGGGUUuuGUCG---CGCGUUGGg-------------CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 28112 0.68 0.468418
Target:  5'- cGCCCA----GGCGCGCAAgcucaaucguguaCUGCGCGu -3'
miRNA:   3'- -CGGGUuuugUCGCGCGUUg------------GGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 42047 0.68 0.47142
Target:  5'- gGCgCCAAGaucgaccGCGGCGUGUacGACCUgGCGCGc -3'
miRNA:   3'- -CG-GGUUU-------UGUCGCGCG--UUGGG-CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 21833 0.68 0.472423
Target:  5'- aGCgCAAGcGCAGCGUGUGgacACCgGCGCa -3'
miRNA:   3'- -CGgGUUU-UGUCGCGCGU---UGGgCGCGc -5'
13001 5' -56.7 NC_003387.1 + 52358 0.68 0.472423
Target:  5'- gGCgCGGAACcGCucGCGCAGaucgaCCGCGCGc -3'
miRNA:   3'- -CGgGUUUUGuCG--CGCGUUg----GGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 23713 0.68 0.472423
Target:  5'- cGCCC-AGGCGGCGaaCGACUCgGCGCa -3'
miRNA:   3'- -CGGGuUUUGUCGCgcGUUGGG-CGCGc -5'
13001 5' -56.7 NC_003387.1 + 52030 0.68 0.472423
Target:  5'- gGCgCAAuGACguGGCGCGCGACCuCGCuaaGCGu -3'
miRNA:   3'- -CGgGUU-UUG--UCGCGCGUUGG-GCG---CGC- -5'
13001 5' -56.7 NC_003387.1 + 45834 0.68 0.472423
Target:  5'- gGCCCGcGACGaCGcCGCGGagauCCUGCGCGa -3'
miRNA:   3'- -CGGGUuUUGUcGC-GCGUU----GGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 11418 0.68 0.472423
Target:  5'- gGCCCcGAGguGCugucgucgGUGCucguGCCCGCGCu -3'
miRNA:   3'- -CGGGuUUUguCG--------CGCGu---UGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 9600 0.68 0.481497
Target:  5'- cGCCCAccaccGCGGCGcCGCGccgucgcgcucguACCCgGCGCc -3'
miRNA:   3'- -CGGGUuu---UGUCGC-GCGU-------------UGGG-CGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.