miRNA display CGI


Results 121 - 140 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 4199 0.68 0.481497
Target:  5'- cGCCCGAcuacgugcAGCAGUGggaGCAggauuaccugcagGCCCGcCGCGa -3'
miRNA:   3'- -CGGGUU--------UUGUCGCg--CGU-------------UGGGC-GCGC- -5'
13001 5' -56.7 NC_003387.1 + 8088 0.68 0.48251
Target:  5'- uGCCgGu--CGGCGC-CAACCCGCcCGa -3'
miRNA:   3'- -CGGgUuuuGUCGCGcGUUGGGCGcGC- -5'
13001 5' -56.7 NC_003387.1 + 4470 0.68 0.491677
Target:  5'- aGCCCGAGcugcuggccGCGGCcgaccggGCGCGACacgauCGUGCGg -3'
miRNA:   3'- -CGGGUUU---------UGUCG-------CGCGUUGg----GCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 35441 0.68 0.4927
Target:  5'- aCCCGgcuaaagacguuGGACgAGCGCGCAGUCCGCGa- -3'
miRNA:   3'- cGGGU------------UUUG-UCGCGCGUUGGGCGCgc -5'
13001 5' -56.7 NC_003387.1 + 5319 0.68 0.4927
Target:  5'- gGCUCGGGGCGGgGC-CGGuugcCCCGCGCu -3'
miRNA:   3'- -CGGGUUUUGUCgCGcGUU----GGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 44351 0.68 0.4927
Target:  5'- cGUCCAGAACAccGCGgccUGCAugCCGaacaGCGg -3'
miRNA:   3'- -CGGGUUUUGU--CGC---GCGUugGGCg---CGC- -5'
13001 5' -56.7 NC_003387.1 + 15141 0.68 0.4927
Target:  5'- aUCCAGuuguggugaccgGGCAGCGUgaugaGCAGCCCGUcgGCGa -3'
miRNA:   3'- cGGGUU------------UUGUCGCG-----CGUUGGGCG--CGC- -5'
13001 5' -56.7 NC_003387.1 + 10842 0.68 0.4927
Target:  5'- uCCCAAuACGGC-UGCAGgCCGUGCc -3'
miRNA:   3'- cGGGUUuUGUCGcGCGUUgGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 658 0.68 0.4927
Target:  5'- cGCCCGAugaaccauucGACGGCGaCGCuuAGCgaggUCGCGCGc -3'
miRNA:   3'- -CGGGUU----------UUGUCGC-GCG--UUG----GGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 25434 0.68 0.4927
Target:  5'- uGCUUAucGGAUacucgcagGGCGCGCuGCCCGCGUc -3'
miRNA:   3'- -CGGGU--UUUG--------UCGCGCGuUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 15671 0.68 0.4927
Target:  5'- uGCCCAcgcaggugauGAAuccCGGCGCGUGGCUCG-GCGa -3'
miRNA:   3'- -CGGGU----------UUU---GUCGCGCGUUGGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 244 0.68 0.4927
Target:  5'- cCCCGAcaugcuCAGCGUGCAgugcccuggcuGCgCCGCGCc -3'
miRNA:   3'- cGGGUUuu----GUCGCGCGU-----------UG-GGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 24456 0.68 0.4927
Target:  5'- aGCCgAcGAGCAGCGCGaggugcugAACCUGCuGCGc -3'
miRNA:   3'- -CGGgU-UUUGUCGCGCg-------UUGGGCG-CGC- -5'
13001 5' -56.7 NC_003387.1 + 34167 0.68 0.4927
Target:  5'- cGCCCucGGCcuuGCGCucgaaCGACUCGCGCa -3'
miRNA:   3'- -CGGGuuUUGu--CGCGc----GUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 27270 0.68 0.502988
Target:  5'- aGCCgCGAcgcgGGCAGCGCGC--CCUGCGa- -3'
miRNA:   3'- -CGG-GUU----UUGUCGCGCGuuGGGCGCgc -5'
13001 5' -56.7 NC_003387.1 + 36290 0.68 0.502988
Target:  5'- gGUCCAGAACgcauGGCGCGCAACggauCUGUgaacGCGa -3'
miRNA:   3'- -CGGGUUUUG----UCGCGCGUUG----GGCG----CGC- -5'
13001 5' -56.7 NC_003387.1 + 18095 0.68 0.502988
Target:  5'- uGCCCGAGGCuGCGCagguagGCGGCCaUGC-CGg -3'
miRNA:   3'- -CGGGUUUUGuCGCG------CGUUGG-GCGcGC- -5'
13001 5' -56.7 NC_003387.1 + 52658 0.68 0.502988
Target:  5'- cGCCC---GCGGCGC-CGAUCgaGCGCGu -3'
miRNA:   3'- -CGGGuuuUGUCGCGcGUUGGg-CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 3805 0.68 0.502988
Target:  5'- cGCCggCAAAAguGCcaacGCGCAGCUCGCagGCGa -3'
miRNA:   3'- -CGG--GUUUUguCG----CGCGUUGGGCG--CGC- -5'
13001 5' -56.7 NC_003387.1 + 48875 0.68 0.502988
Target:  5'- aGCCgGAucguCGGCGcCGCcuaCCGCGCGc -3'
miRNA:   3'- -CGGgUUuu--GUCGC-GCGuugGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.