miRNA display CGI


Results 141 - 160 of 251 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 31027 0.68 0.513367
Target:  5'- uGCgCCGGGGCGGCGgccaGCAcggcACCgGCGCc -3'
miRNA:   3'- -CG-GGUUUUGUCGCg---CGU----UGGgCGCGc -5'
13001 5' -56.7 NC_003387.1 + 47881 0.68 0.513367
Target:  5'- cGCCaucu-CGGCGUGCAcgucGCCacaaGCGCGu -3'
miRNA:   3'- -CGGguuuuGUCGCGCGU----UGGg---CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 46883 0.68 0.513367
Target:  5'- cGCCCccacCuGCgGCGCAGCCCGgGUc -3'
miRNA:   3'- -CGGGuuuuGuCG-CGCGUUGGGCgCGc -5'
13001 5' -56.7 NC_003387.1 + 20528 0.68 0.513367
Target:  5'- cGCUCGucgguGACGaCGCGCAGCUCG-GCGg -3'
miRNA:   3'- -CGGGUu----UUGUcGCGCGUUGGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 18909 0.68 0.513367
Target:  5'- cGCCgucGGCGGCGCGCucGACCCuaCGCa -3'
miRNA:   3'- -CGGguuUUGUCGCGCG--UUGGGc-GCGc -5'
13001 5' -56.7 NC_003387.1 + 49756 0.68 0.513367
Target:  5'- gGCCCcGAGCGaggcccauGCGCGUuACCUGCGg- -3'
miRNA:   3'- -CGGGuUUUGU--------CGCGCGuUGGGCGCgc -5'
13001 5' -56.7 NC_003387.1 + 45758 0.68 0.513367
Target:  5'- gGUCCGAG--GGCGCGCuguggcgccuGCCCGcCGCu -3'
miRNA:   3'- -CGGGUUUugUCGCGCGu---------UGGGC-GCGc -5'
13001 5' -56.7 NC_003387.1 + 14430 0.68 0.523834
Target:  5'- --aCGAcGACAGCGUGCcg-CCGCGCGg -3'
miRNA:   3'- cggGUU-UUGUCGCGCGuugGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 30606 0.68 0.523834
Target:  5'- gGCCaCAucACGaCGCacgGCAACCUGCGCa -3'
miRNA:   3'- -CGG-GUuuUGUcGCG---CGUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 22465 0.68 0.523834
Target:  5'- uGCCCGAcccCGGCGC-CGACCC-CGaCGa -3'
miRNA:   3'- -CGGGUUuu-GUCGCGcGUUGGGcGC-GC- -5'
13001 5' -56.7 NC_003387.1 + 9961 0.68 0.523834
Target:  5'- cGCaCCGAG--GGCGCGCAuaaaAUCCGcCGCa -3'
miRNA:   3'- -CG-GGUUUugUCGCGCGU----UGGGC-GCGc -5'
13001 5' -56.7 NC_003387.1 + 8286 0.68 0.523834
Target:  5'- cGCCCGAG--GGCGaCGUGuggaucACCgGCGCGg -3'
miRNA:   3'- -CGGGUUUugUCGC-GCGU------UGGgCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 47791 0.68 0.523834
Target:  5'- cGUUCG--ACAaCGCGCGACgCCGCGCc -3'
miRNA:   3'- -CGGGUuuUGUcGCGCGUUG-GGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 33203 0.68 0.523834
Target:  5'- cGCgCAGcGCaAGCGCGaGGCCCGCucgGCGa -3'
miRNA:   3'- -CGgGUUuUG-UCGCGCgUUGGGCG---CGC- -5'
13001 5' -56.7 NC_003387.1 + 19733 0.68 0.523834
Target:  5'- gGCCCGcucGAAC-GCGgGCAcguAgUCGCGCGg -3'
miRNA:   3'- -CGGGU---UUUGuCGCgCGU---UgGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 20143 0.67 0.533324
Target:  5'- cGUCaggauGAGCAGCGCG-AACCCgagggcgucgaggGCGCGg -3'
miRNA:   3'- -CGGgu---UUUGUCGCGCgUUGGG-------------CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 4762 0.67 0.534382
Target:  5'- cGCCCAGcucGCGGUGCuucGCGGCCCacacgGCGUc -3'
miRNA:   3'- -CGGGUUu--UGUCGCG---CGUUGGG-----CGCGc -5'
13001 5' -56.7 NC_003387.1 + 49194 0.67 0.534382
Target:  5'- cGCCUggGGCGGCG-GCGggggcACUgGCGCc -3'
miRNA:   3'- -CGGGuuUUGUCGCgCGU-----UGGgCGCGc -5'
13001 5' -56.7 NC_003387.1 + 28369 0.67 0.534382
Target:  5'- uGUCgCAGGGCGG-GCGCAACUCGUGg- -3'
miRNA:   3'- -CGG-GUUUUGUCgCGCGUUGGGCGCgc -5'
13001 5' -56.7 NC_003387.1 + 38450 0.67 0.534382
Target:  5'- gGCCCAcGACuGCGUGUucuGCCCGUu-- -3'
miRNA:   3'- -CGGGUuUUGuCGCGCGu--UGGGCGcgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.