miRNA display CGI


Results 61 - 80 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 14726 0.67 0.577243
Target:  5'- gGCUUGcuGCGGuCGCGCAGCCagGCGuCGa -3'
miRNA:   3'- -CGGGUuuUGUC-GCGCGUUGGg-CGC-GC- -5'
13001 5' -56.7 NC_003387.1 + 20817 0.67 0.577243
Target:  5'- cGCUCGGAGCAGgggauacguCGCGCGACgUCG-GCGa -3'
miRNA:   3'- -CGGGUUUUGUC---------GCGCGUUG-GGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 3291 0.67 0.577243
Target:  5'- cCCCGAcACGGcCGC-CGACUCGgGCGc -3'
miRNA:   3'- cGGGUUuUGUC-GCGcGUUGGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 22397 0.67 0.576161
Target:  5'- gGCaCCAGGAaaaAGCGcCGcCAGCCCugguaauGCGCGu -3'
miRNA:   3'- -CG-GGUUUUg--UCGC-GC-GUUGGG-------CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 49257 0.67 0.566441
Target:  5'- cGCCgGGGugA-CGCGCAucgaCCGCGUGa -3'
miRNA:   3'- -CGGgUUUugUcGCGCGUug--GGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 22360 0.67 0.566441
Target:  5'- gGCCCAGGcgcacccggcGCAGUGUGgu-UCCGCGCc -3'
miRNA:   3'- -CGGGUUU----------UGUCGCGCguuGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 42690 0.67 0.566441
Target:  5'- cGCCCu---CGGCGCGCuucGGCUCGuCGUc -3'
miRNA:   3'- -CGGGuuuuGUCGCGCG---UUGGGC-GCGc -5'
13001 5' -56.7 NC_003387.1 + 30623 0.67 0.566441
Target:  5'- cGCCgGGGAUGGCGcCGUAcguGCCCcacGCGCu -3'
miRNA:   3'- -CGGgUUUUGUCGC-GCGU---UGGG---CGCGc -5'
13001 5' -56.7 NC_003387.1 + 33300 0.67 0.566441
Target:  5'- cGCCCugugGGACGGUGUaaguGCCCGCGaCGu -3'
miRNA:   3'- -CGGGu---UUUGUCGCGcgu-UGGGCGC-GC- -5'
13001 5' -56.7 NC_003387.1 + 27888 0.67 0.566441
Target:  5'- aCCCGgccgcAGACAGCGCacacGCGGCCUugaccggcgGCGUGg -3'
miRNA:   3'- cGGGU-----UUUGUCGCG----CGUUGGG---------CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 28828 0.67 0.566441
Target:  5'- aGCCCcu--CGGCGCGCAGCaCGUcgGCc -3'
miRNA:   3'- -CGGGuuuuGUCGCGCGUUGgGCG--CGc -5'
13001 5' -56.7 NC_003387.1 + 16530 0.67 0.566441
Target:  5'- gGCgCCAcAGCAGCGCGUacagguggcaGAUCgGgGCGg -3'
miRNA:   3'- -CG-GGUuUUGUCGCGCG----------UUGGgCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 9662 0.67 0.566441
Target:  5'- aGCCCucgGGGCGGUGCGggguCAGCUCGCcCGu -3'
miRNA:   3'- -CGGGu--UUUGUCGCGC----GUUGGGCGcGC- -5'
13001 5' -56.7 NC_003387.1 + 18039 0.67 0.566441
Target:  5'- gGCCC---ACGGCGUGUuuuucgucgGGCUCGUGCa -3'
miRNA:   3'- -CGGGuuuUGUCGCGCG---------UUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 8533 0.67 0.555692
Target:  5'- gGCUCGcGggUAGUuaGUuGCCCGCGCGg -3'
miRNA:   3'- -CGGGU-UuuGUCGcgCGuUGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 41017 0.67 0.555692
Target:  5'- cGCCCAAaucgcGACAGCGaGCccGACgaCCGCgGCGa -3'
miRNA:   3'- -CGGGUU-----UUGUCGCgCG--UUG--GGCG-CGC- -5'
13001 5' -56.7 NC_003387.1 + 23839 0.67 0.555692
Target:  5'- cGCgCCGGGACucGGCGC-CGugCCGCucGCGg -3'
miRNA:   3'- -CG-GGUUUUG--UCGCGcGUugGGCG--CGC- -5'
13001 5' -56.7 NC_003387.1 + 18412 0.67 0.55462
Target:  5'- gGCCgcGGGCAGCGCgggcugcucggGCAGCCacguguaCGCGCGc -3'
miRNA:   3'- -CGGguUUUGUCGCG-----------CGUUGG-------GCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 41126 0.67 0.55462
Target:  5'- -aCCGGAucaagugGCAGCGCGcCGACggCCGCuGCGa -3'
miRNA:   3'- cgGGUUU-------UGUCGCGC-GUUG--GGCG-CGC- -5'
13001 5' -56.7 NC_003387.1 + 45403 0.67 0.549271
Target:  5'- cGCCCGAgccgaucguGACGGUuuacgacaaggacauGCGCAagcucgccggGCCUGCGCc -3'
miRNA:   3'- -CGGGUU---------UUGUCG---------------CGCGU----------UGGGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.