miRNA display CGI


Results 81 - 100 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 37805 0.67 0.545003
Target:  5'- aCCCGcggucgcAGCAGCGCGCGAUcgggCCGaGCGa -3'
miRNA:   3'- cGGGUu------UUGUCGCGCGUUG----GGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 46093 0.67 0.545003
Target:  5'- aGCCCAAGACGGC-CGCcGACauguuccggCUGCuGCGg -3'
miRNA:   3'- -CGGGUUUUGUCGcGCG-UUG---------GGCG-CGC- -5'
13001 5' -56.7 NC_003387.1 + 7950 0.67 0.545003
Target:  5'- gGCCgaaauCAAGACGGCGcCGCuuauGACgaUCGCGCGg -3'
miRNA:   3'- -CGG-----GUUUUGUCGC-GCG----UUG--GGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 3425 0.67 0.545003
Target:  5'- uGCCCu---CGGCGUGCucggcgagcACCUGgGCGa -3'
miRNA:   3'- -CGGGuuuuGUCGCGCGu--------UGGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 40340 0.67 0.545003
Target:  5'- cGCCUgcAGCAGCGgcagauUGCGGgCCGuCGCGg -3'
miRNA:   3'- -CGGGuuUUGUCGC------GCGUUgGGC-GCGC- -5'
13001 5' -56.7 NC_003387.1 + 35690 0.67 0.545003
Target:  5'- cGCCCGGcGAgGGCG-GCAGCCgC-CGCGg -3'
miRNA:   3'- -CGGGUU-UUgUCGCgCGUUGG-GcGCGC- -5'
13001 5' -56.7 NC_003387.1 + 8016 0.67 0.545003
Target:  5'- uGCCCucuguCGGCcCGCugguGgCCGCGCGa -3'
miRNA:   3'- -CGGGuuuu-GUCGcGCGu---UgGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 44779 0.67 0.545003
Target:  5'- gGCCCGAccucGACAa-GC-UGGCCCGCGCGa -3'
miRNA:   3'- -CGGGUU----UUGUcgCGcGUUGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 1204 0.67 0.545003
Target:  5'- uGCCCGcgacGAacGCGGCGCcUAACCCGCu-- -3'
miRNA:   3'- -CGGGU----UU--UGUCGCGcGUUGGGCGcgc -5'
13001 5' -56.7 NC_003387.1 + 39158 0.67 0.534382
Target:  5'- cGCCgAGGGCguguacuggucGGUGCGCGACauuCGCGUGc -3'
miRNA:   3'- -CGGgUUUUG-----------UCGCGCGUUGg--GCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 38450 0.67 0.534382
Target:  5'- gGCCCAcGACuGCGUGUucuGCCCGUu-- -3'
miRNA:   3'- -CGGGUuUUGuCGCGCGu--UGGGCGcgc -5'
13001 5' -56.7 NC_003387.1 + 28369 0.67 0.534382
Target:  5'- uGUCgCAGGGCGG-GCGCAACUCGUGg- -3'
miRNA:   3'- -CGG-GUUUUGUCgCGCGUUGGGCGCgc -5'
13001 5' -56.7 NC_003387.1 + 49194 0.67 0.534382
Target:  5'- cGCCUggGGCGGCG-GCGggggcACUgGCGCc -3'
miRNA:   3'- -CGGGuuUUGUCGCgCGU-----UGGgCGCGc -5'
13001 5' -56.7 NC_003387.1 + 34505 0.67 0.534382
Target:  5'- cGCCCGccgcuGCGGCGcCGCGAUCCuCGgGc -3'
miRNA:   3'- -CGGGUuu---UGUCGC-GCGUUGGGcGCgC- -5'
13001 5' -56.7 NC_003387.1 + 4762 0.67 0.534382
Target:  5'- cGCCCAGcucGCGGUGCuucGCGGCCCacacgGCGUc -3'
miRNA:   3'- -CGGGUUu--UGUCGCG---CGUUGGG-----CGCGc -5'
13001 5' -56.7 NC_003387.1 + 20143 0.67 0.533324
Target:  5'- cGUCaggauGAGCAGCGCG-AACCCgagggcgucgaggGCGCGg -3'
miRNA:   3'- -CGGgu---UUUGUCGCGCgUUGGG-------------CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 9961 0.68 0.523834
Target:  5'- cGCaCCGAG--GGCGCGCAuaaaAUCCGcCGCa -3'
miRNA:   3'- -CG-GGUUUugUCGCGCGU----UGGGC-GCGc -5'
13001 5' -56.7 NC_003387.1 + 22465 0.68 0.523834
Target:  5'- uGCCCGAcccCGGCGC-CGACCC-CGaCGa -3'
miRNA:   3'- -CGGGUUuu-GUCGCGcGUUGGGcGC-GC- -5'
13001 5' -56.7 NC_003387.1 + 30606 0.68 0.523834
Target:  5'- gGCCaCAucACGaCGCacgGCAACCUGCGCa -3'
miRNA:   3'- -CGG-GUuuUGUcGCG---CGUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 19733 0.68 0.523834
Target:  5'- gGCCCGcucGAAC-GCGgGCAcguAgUCGCGCGg -3'
miRNA:   3'- -CGGGU---UUUGuCGCgCGU---UgGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.