miRNA display CGI


Results 101 - 120 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 19733 0.68 0.523834
Target:  5'- gGCCCGcucGAAC-GCGgGCAcguAgUCGCGCGg -3'
miRNA:   3'- -CGGGU---UUUGuCGCgCGU---UgGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 9961 0.68 0.523834
Target:  5'- cGCaCCGAG--GGCGCGCAuaaaAUCCGcCGCa -3'
miRNA:   3'- -CG-GGUUUugUCGCGCGU----UGGGC-GCGc -5'
13001 5' -56.7 NC_003387.1 + 30606 0.68 0.523834
Target:  5'- gGCCaCAucACGaCGCacgGCAACCUGCGCa -3'
miRNA:   3'- -CGG-GUuuUGUcGCG---CGUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 22465 0.68 0.523834
Target:  5'- uGCCCGAcccCGGCGC-CGACCC-CGaCGa -3'
miRNA:   3'- -CGGGUUuu-GUCGCGcGUUGGGcGC-GC- -5'
13001 5' -56.7 NC_003387.1 + 31027 0.68 0.513367
Target:  5'- uGCgCCGGGGCGGCGgccaGCAcggcACCgGCGCc -3'
miRNA:   3'- -CG-GGUUUUGUCGCg---CGU----UGGgCGCGc -5'
13001 5' -56.7 NC_003387.1 + 18909 0.68 0.513367
Target:  5'- cGCCgucGGCGGCGCGCucGACCCuaCGCa -3'
miRNA:   3'- -CGGguuUUGUCGCGCG--UUGGGc-GCGc -5'
13001 5' -56.7 NC_003387.1 + 49756 0.68 0.513367
Target:  5'- gGCCCcGAGCGaggcccauGCGCGUuACCUGCGg- -3'
miRNA:   3'- -CGGGuUUUGU--------CGCGCGuUGGGCGCgc -5'
13001 5' -56.7 NC_003387.1 + 46883 0.68 0.513367
Target:  5'- cGCCCccacCuGCgGCGCAGCCCGgGUc -3'
miRNA:   3'- -CGGGuuuuGuCG-CGCGUUGGGCgCGc -5'
13001 5' -56.7 NC_003387.1 + 20528 0.68 0.513367
Target:  5'- cGCUCGucgguGACGaCGCGCAGCUCG-GCGg -3'
miRNA:   3'- -CGGGUu----UUGUcGCGCGUUGGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 45758 0.68 0.513367
Target:  5'- gGUCCGAG--GGCGCGCuguggcgccuGCCCGcCGCu -3'
miRNA:   3'- -CGGGUUUugUCGCGCGu---------UGGGC-GCGc -5'
13001 5' -56.7 NC_003387.1 + 47881 0.68 0.513367
Target:  5'- cGCCaucu-CGGCGUGCAcgucGCCacaaGCGCGu -3'
miRNA:   3'- -CGGguuuuGUCGCGCGU----UGGg---CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 48875 0.68 0.502988
Target:  5'- aGCCgGAucguCGGCGcCGCcuaCCGCGCGc -3'
miRNA:   3'- -CGGgUUuu--GUCGC-GCGuugGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 36290 0.68 0.502988
Target:  5'- gGUCCAGAACgcauGGCGCGCAACggauCUGUgaacGCGa -3'
miRNA:   3'- -CGGGUUUUG----UCGCGCGUUG----GGCG----CGC- -5'
13001 5' -56.7 NC_003387.1 + 27270 0.68 0.502988
Target:  5'- aGCCgCGAcgcgGGCAGCGCGC--CCUGCGa- -3'
miRNA:   3'- -CGG-GUU----UUGUCGCGCGuuGGGCGCgc -5'
13001 5' -56.7 NC_003387.1 + 3805 0.68 0.502988
Target:  5'- cGCCggCAAAAguGCcaacGCGCAGCUCGCagGCGa -3'
miRNA:   3'- -CGG--GUUUUguCG----CGCGUUGGGCG--CGC- -5'
13001 5' -56.7 NC_003387.1 + 18095 0.68 0.502988
Target:  5'- uGCCCGAGGCuGCGCagguagGCGGCCaUGC-CGg -3'
miRNA:   3'- -CGGGUUUUGuCGCG------CGUUGG-GCGcGC- -5'
13001 5' -56.7 NC_003387.1 + 52658 0.68 0.502988
Target:  5'- cGCCC---GCGGCGC-CGAUCgaGCGCGu -3'
miRNA:   3'- -CGGGuuuUGUCGCGcGUUGGg-CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 34167 0.68 0.4927
Target:  5'- cGCCCucGGCcuuGCGCucgaaCGACUCGCGCa -3'
miRNA:   3'- -CGGGuuUUGu--CGCGc----GUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 244 0.68 0.4927
Target:  5'- cCCCGAcaugcuCAGCGUGCAgugcccuggcuGCgCCGCGCc -3'
miRNA:   3'- cGGGUUuu----GUCGCGCGU-----------UG-GGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 24456 0.68 0.4927
Target:  5'- aGCCgAcGAGCAGCGCGaggugcugAACCUGCuGCGc -3'
miRNA:   3'- -CGGgU-UUUGUCGCGCg-------UUGGGCG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.