miRNA display CGI


Results 41 - 60 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 7654 0.69 0.441856
Target:  5'- gGCCCAGGACGGCccucgacGCGCucggcGACCUGCu-- -3'
miRNA:   3'- -CGGGUUUUGUCG-------CGCG-----UUGGGCGcgc -5'
13001 5' -56.7 NC_003387.1 + 7745 0.66 0.620813
Target:  5'- cGCCuCGGcggcAGCGGCGauCGCGGCCUGagcCGCGg -3'
miRNA:   3'- -CGG-GUU----UUGUCGC--GCGUUGGGC---GCGC- -5'
13001 5' -56.7 NC_003387.1 + 7840 0.66 0.642692
Target:  5'- cGCCCG--GCGGCuGCGuCAGCUCG-GCc -3'
miRNA:   3'- -CGGGUuuUGUCG-CGC-GUUGGGCgCGc -5'
13001 5' -56.7 NC_003387.1 + 7879 0.67 0.588089
Target:  5'- gGCaCCGAccuugagguCGGC-CGCAcucguGCCCGCGCGc -3'
miRNA:   3'- -CG-GGUUuu-------GUCGcGCGU-----UGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 7950 0.67 0.545003
Target:  5'- gGCCgaaauCAAGACGGCGcCGCuuauGACgaUCGCGCGg -3'
miRNA:   3'- -CGG-----GUUUUGUCGC-GCG----UUG--GGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 8016 0.67 0.545003
Target:  5'- uGCCCucuguCGGCcCGCugguGgCCGCGCGa -3'
miRNA:   3'- -CGGGuuuu-GUCGcGCGu---UgGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 8047 0.67 0.577243
Target:  5'- aGCCUAucugcucGACgAGCuG-GCGGCCCGCGCu -3'
miRNA:   3'- -CGGGUu------UUG-UCG-CgCGUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 8088 0.68 0.48251
Target:  5'- uGCCgGu--CGGCGC-CAACCCGCcCGa -3'
miRNA:   3'- -CGGgUuuuGUCGCGcGUUGGGCGcGC- -5'
13001 5' -56.7 NC_003387.1 + 8193 0.74 0.218762
Target:  5'- aGCCCu--GCGGCGCcggGCGGCCCG-GCa -3'
miRNA:   3'- -CGGGuuuUGUCGCG---CGUUGGGCgCGc -5'
13001 5' -56.7 NC_003387.1 + 8254 0.7 0.395925
Target:  5'- aCCCGucACgcgGGCGUGCAgcGCCuCGCGCa -3'
miRNA:   3'- cGGGUuuUG---UCGCGCGU--UGG-GCGCGc -5'
13001 5' -56.7 NC_003387.1 + 8286 0.68 0.523834
Target:  5'- cGCCCGAG--GGCGaCGUGuggaucACCgGCGCGg -3'
miRNA:   3'- -CGGGUUUugUCGC-GCGU------UGGgCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 8533 0.67 0.555692
Target:  5'- gGCUCGcGggUAGUuaGUuGCCCGCGCGg -3'
miRNA:   3'- -CGGGU-UuuGUCGcgCGuUGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 9600 0.68 0.481497
Target:  5'- cGCCCAccaccGCGGCGcCGCGccgucgcgcucguACCCgGCGCc -3'
miRNA:   3'- -CGGGUuu---UGUCGC-GCGU-------------UGGG-CGCGc -5'
13001 5' -56.7 NC_003387.1 + 9662 0.67 0.566441
Target:  5'- aGCCCucgGGGCGGUGCGggguCAGCUCGCcCGu -3'
miRNA:   3'- -CGGGu--UUUGUCGCGC----GUUGGGCGcGC- -5'
13001 5' -56.7 NC_003387.1 + 9961 0.68 0.523834
Target:  5'- cGCaCCGAG--GGCGCGCAuaaaAUCCGcCGCa -3'
miRNA:   3'- -CG-GGUUUugUCGCGCGU----UGGGC-GCGc -5'
13001 5' -56.7 NC_003387.1 + 10320 0.71 0.339143
Target:  5'- uGCUCGAAcugcuccucagucagGCAGCcguuGCGCAGCCCGCa-- -3'
miRNA:   3'- -CGGGUUU---------------UGUCG----CGCGUUGGGCGcgc -5'
13001 5' -56.7 NC_003387.1 + 10501 0.77 0.140651
Target:  5'- cGCCCAucGCGGUGCGCcggucgccguccuGCUCGCGCa -3'
miRNA:   3'- -CGGGUuuUGUCGCGCGu------------UGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 10729 0.67 0.588089
Target:  5'- gGCCCcaccgcuuGAGCAcCGCgGCGGCCucCGCGCGc -3'
miRNA:   3'- -CGGGu-------UUUGUcGCG-CGUUGG--GCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 10842 0.68 0.4927
Target:  5'- uCCCAAuACGGC-UGCAGgCCGUGCc -3'
miRNA:   3'- cGGGUUuUGUCGcGCGUUgGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 11022 0.66 0.620813
Target:  5'- cGCCUucguCGGCGcCGCGACgCCGgGuCGg -3'
miRNA:   3'- -CGGGuuuuGUCGC-GCGUUG-GGCgC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.