miRNA display CGI


Results 81 - 100 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 15505 0.71 0.327884
Target:  5'- cGCCCAcgGCGGCGUuuaugaGCAccGCCUGCuGCa -3'
miRNA:   3'- -CGGGUuuUGUCGCG------CGU--UGGGCG-CGc -5'
13001 5' -56.7 NC_003387.1 + 15671 0.68 0.4927
Target:  5'- uGCCCAcgcaggugauGAAuccCGGCGCGUGGCUCG-GCGa -3'
miRNA:   3'- -CGGGU----------UUU---GUCGCGCGUUGGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 15702 0.69 0.434151
Target:  5'- uGCCCGGccauauccauugcguACA-CGCGgAACCCGCGCc -3'
miRNA:   3'- -CGGGUUu--------------UGUcGCGCgUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 15887 0.69 0.450617
Target:  5'- uGCCCGAggacgagGACAGCcCGCAcCCCGagcuggcCGCGa -3'
miRNA:   3'- -CGGGUU-------UUGUCGcGCGUuGGGC-------GCGC- -5'
13001 5' -56.7 NC_003387.1 + 16183 0.65 0.650345
Target:  5'- uUCCAAuaGGCGGCGuCGgugcugucggggcuCAGCCUGCGCu -3'
miRNA:   3'- cGGGUU--UUGUCGC-GC--------------GUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 16530 0.67 0.566441
Target:  5'- gGCgCCAcAGCAGCGCGUacagguggcaGAUCgGgGCGg -3'
miRNA:   3'- -CG-GGUuUUGUCGCGCG----------UUGGgCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 17160 0.74 0.21309
Target:  5'- gGCCCGcgcuGAGCuGGUGCGCcGCCUGgGCGg -3'
miRNA:   3'- -CGGGU----UUUG-UCGCGCGuUGGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 17716 0.71 0.352351
Target:  5'- aGUUCGAGGCGGUGCGCcccGGCCCG-GCc -3'
miRNA:   3'- -CGGGUUUUGUCGCGCG---UUGGGCgCGc -5'
13001 5' -56.7 NC_003387.1 + 18039 0.7 0.399558
Target:  5'- uGCCCGAGGCGGCGUuucagaacuucaccgGCGuuGCCCaGCgGCa -3'
miRNA:   3'- -CGGGUUUUGUCGCG---------------CGU--UGGG-CG-CGc -5'
13001 5' -56.7 NC_003387.1 + 18039 0.67 0.566441
Target:  5'- gGCCC---ACGGCGUGUuuuucgucgGGCUCGUGCa -3'
miRNA:   3'- -CGGGuuuUGUCGCGCG---------UUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 18095 0.68 0.502988
Target:  5'- uGCCCGAGGCuGCGCagguagGCGGCCaUGC-CGg -3'
miRNA:   3'- -CGGGUUUUGuCGCG------CGUUGG-GCGcGC- -5'
13001 5' -56.7 NC_003387.1 + 18209 0.72 0.304698
Target:  5'- aGCCCGAGgaucGCGGCGcCGCAGCggCGgGCGu -3'
miRNA:   3'- -CGGGUUU----UGUCGC-GCGUUGg-GCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 18279 0.66 0.598972
Target:  5'- cGCCgCAcuacucGAcCAGCGC-CGACCCGgcCGCGg -3'
miRNA:   3'- -CGG-GU------UUuGUCGCGcGUUGGGC--GCGC- -5'
13001 5' -56.7 NC_003387.1 + 18321 0.7 0.386936
Target:  5'- cGCCCGGcAACGGCGUGgCcgucguGCCCGC-CGg -3'
miRNA:   3'- -CGGGUU-UUGUCGCGC-Gu-----UGGGCGcGC- -5'
13001 5' -56.7 NC_003387.1 + 18412 0.67 0.55462
Target:  5'- gGCCgcGGGCAGCGCgggcugcucggGCAGCCacguguaCGCGCGc -3'
miRNA:   3'- -CGGguUUUGUCGCG-----------CGUUGG-------GCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 18465 0.66 0.620813
Target:  5'- cGCCCGAcuCGGCGauCAGCCggucgaGCGCc -3'
miRNA:   3'- -CGGGUUuuGUCGCgcGUUGGg-----CGCGc -5'
13001 5' -56.7 NC_003387.1 + 18565 0.67 0.588089
Target:  5'- uGCCCAcAGguGCGgGuCGACCCagGCGUc -3'
miRNA:   3'- -CGGGUuUUguCGCgC-GUUGGG--CGCGc -5'
13001 5' -56.7 NC_003387.1 + 18697 0.66 0.642692
Target:  5'- -aCCAGGuGCGGguCGCGCAGCgCCaggGCGCGg -3'
miRNA:   3'- cgGGUUU-UGUC--GCGCGUUG-GG---CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 18909 0.68 0.513367
Target:  5'- cGCCgucGGCGGCGCGCucGACCCuaCGCa -3'
miRNA:   3'- -CGGguuUUGUCGCGCG--UUGGGc-GCGc -5'
13001 5' -56.7 NC_003387.1 + 19153 0.67 0.587003
Target:  5'- gGCUCGucGACgcugucgAGgGCGCGGCCCGCaCGg -3'
miRNA:   3'- -CGGGUu-UUG-------UCgCGCGUUGGGCGcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.