miRNA display CGI


Results 101 - 120 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 19302 0.69 0.466422
Target:  5'- aGCCCGAucCAGCucgGCGUGACCgaguacagcgacgaGCGCGg -3'
miRNA:   3'- -CGGGUUuuGUCG---CGCGUUGGg-------------CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 19313 0.67 0.587003
Target:  5'- aGCCgCAcAACGGCcucGCGCGugaauguGCCUGCgGCGg -3'
miRNA:   3'- -CGG-GUuUUGUCG---CGCGU-------UGGGCG-CGC- -5'
13001 5' -56.7 NC_003387.1 + 19656 0.71 0.327884
Target:  5'- cGCUCGcgGCgcuuGGCGCGCAcCCgGUGCGg -3'
miRNA:   3'- -CGGGUuuUG----UCGCGCGUuGGgCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 19733 0.68 0.523834
Target:  5'- gGCCCGcucGAAC-GCGgGCAcguAgUCGCGCGg -3'
miRNA:   3'- -CGGGU---UUUGuCGCgCGU---UgGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 20143 0.67 0.533324
Target:  5'- cGUCaggauGAGCAGCGCG-AACCCgagggcgucgaggGCGCGg -3'
miRNA:   3'- -CGGgu---UUUGUCGCGCgUUGGG-------------CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 20528 0.68 0.513367
Target:  5'- cGCUCGucgguGACGaCGCGCAGCUCG-GCGg -3'
miRNA:   3'- -CGGGUu----UUGUcGCGCGUUGGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 20817 0.67 0.577243
Target:  5'- cGCUCGGAGCAGgggauacguCGCGCGACgUCG-GCGa -3'
miRNA:   3'- -CGGGUUUUGUC---------GCGCGUUG-GGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 20995 0.66 0.631752
Target:  5'- aCCCcuAACucGCcUGCGACCUGCGCu -3'
miRNA:   3'- cGGGuuUUGu-CGcGCGUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 21370 0.72 0.297254
Target:  5'- uGCCCuggcCGGUGCuguuCGACCCGCGCu -3'
miRNA:   3'- -CGGGuuuuGUCGCGc---GUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 21463 0.75 0.181658
Target:  5'- gGCCCc--GCuG-GCGCAGCCCGCGCc -3'
miRNA:   3'- -CGGGuuuUGuCgCGCGUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 21577 0.7 0.395925
Target:  5'- gGCCCA----GGCGCGCGGCaucagcgaggCCGaCGCGg -3'
miRNA:   3'- -CGGGUuuugUCGCGCGUUG----------GGC-GCGC- -5'
13001 5' -56.7 NC_003387.1 + 21691 0.78 0.123145
Target:  5'- cGCCCuggccgccuCGGCgaGCGCGGCCCGCGCc -3'
miRNA:   3'- -CGGGuuuu-----GUCG--CGCGUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 21781 0.66 0.631752
Target:  5'- aGCCa---GCGGCGCaCGAUCUGCGaCGg -3'
miRNA:   3'- -CGGguuuUGUCGCGcGUUGGGCGC-GC- -5'
13001 5' -56.7 NC_003387.1 + 21833 0.68 0.472423
Target:  5'- aGCgCAAGcGCAGCGUGUGgacACCgGCGCa -3'
miRNA:   3'- -CGgGUUU-UGUCGCGCGU---UGGgCGCGc -5'
13001 5' -56.7 NC_003387.1 + 21973 0.66 0.642692
Target:  5'- cGCCCGAcACGGUGCu--GCCCGacgaGCc -3'
miRNA:   3'- -CGGGUUuUGUCGCGcguUGGGCg---CGc -5'
13001 5' -56.7 NC_003387.1 + 22021 0.66 0.597883
Target:  5'- cGCCCc--GCAG-GCGCAcgaaaacgcccccGCCgGUGCGa -3'
miRNA:   3'- -CGGGuuuUGUCgCGCGU-------------UGGgCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 22360 0.67 0.566441
Target:  5'- gGCCCAGGcgcacccggcGCAGUGUGgu-UCCGCGCc -3'
miRNA:   3'- -CGGGUUU----------UGUCGCGCguuGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 22397 0.67 0.576161
Target:  5'- gGCaCCAGGAaaaAGCGcCGcCAGCCCugguaauGCGCGu -3'
miRNA:   3'- -CG-GGUUUUg--UCGC-GC-GUUGGG-------CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 22465 0.68 0.523834
Target:  5'- uGCCCGAcccCGGCGC-CGACCC-CGaCGa -3'
miRNA:   3'- -CGGGUUuu-GUCGCGcGUUGGGcGC-GC- -5'
13001 5' -56.7 NC_003387.1 + 22552 0.67 0.588089
Target:  5'- gGCUCGAcGCGGUgGCGCAggcagauaACCCGCacgcccGCGg -3'
miRNA:   3'- -CGGGUUuUGUCG-CGCGU--------UGGGCG------CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.